Report for Sequence Feature Glyma09g17240
Feature Type: gene_model
Chromosome: Gm09
Start: 21077624
stop: 21079573
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma09g17240
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G57990 AT
Annotation by Michelle Graham. TAIR10: unknown protein; Has 1497 Blast hits to 1323 proteins in 52 species: Archae - 0; Bacteria - 4; Metazoa - 23; Fungi - 34; Plants - 61; Viruses - 0; Other Eukaryotes - 1375 (source: NCBI BLink). | chr3:21470244-21471347 REVERSE LENGTH=367
SoyBase E_val: 1.00E-96 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_Q7FAS5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: OSJNBa0019K04.27 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7FAS5_ORYSJ
SoyBase E_val: 3.00E-08 ISS
UniRef100_UPI000233C319 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233C319 related cluster n=1 Tax=unknown RepID=UPI000233C319
SoyBase E_val: 0 ISS
Expression Patterns of Glyma09g17240
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma09g17240
Paralog Evidence Comments
Glyma02g29410 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma09g17240 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.09g112400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma09g17240
Coding sequences of Glyma09g17240
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma09g17240.1 sequence type=CDS gene model=Glyma09g17240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAAAGCCTCTTTGAAGTTCCGCGAGGAACAGCAAAAACCCCTCTTGAGAGCAAAAGTCCCACTCGGCATCCTCGGCATGCCCTTCCAATCCGGCATAGTCGCTGGCGAATCCAAAGAACTCACTCTCAACCTTTCTACCTTCTTCGAATCGGGTCCTTCTCTCAAAGTTGCGTATCGACCCAACGACTCAAAGAACCCTTTTTCCTTCATAGTGAAAACGGGAACCGGACCCTTCGGTTCCCCTCTCAAGAGCTCCATGCTCATGAGCTGCGAGTTTAACCTTCCCGGTACAACCGGTACCCCGTTGTTTATGCTTCACTTCAAACCCCGCTTCGGCGACTTTACTTTCAAGAAGACGCAGTCTTCGATTTTTGATGGGAAAGGGTTTGGGTCTTTTAACACGCAAAACGACGCCGTTGAGAATGGGAATAATGCTGAAACGCCGTTGATGGAATCGGCCAAGGTTTCGATTCTTGACTCCGGCGCCTCGATGTTCTCCGGCATGGAGGTGGCTGCGCGGACGACTCTGCCGGTGCGGGGACGTGCTGCCGTGAAGTTCCGGTGGGGAGTTAGGATTCCGGCGGAGTTCAAGGGGAACAACGCGTTTCAGAAGATTCCGTTTCTCGTAATGGATAAGATCGGCGTGGAGCACATGATGGAGTGCGGAGATTCGAAGAAGGGGAAGGGGGACGCCGGAGAGAAACCGAGGGTTCCGGCGAGTGCTGACGTGGCGGAGGCGTGCTTTGCGGTGAAGCGGCAGATGGAGGTTCTGCAGGCGGAGAACGGGTTGCTTAGGAACGCCGTGGAAGATCTCCGGCGAGAAATTGTCGGCGGCCGAAGCGGAGGCTCGATTTTGGGGAAAAACCCTAAAAAGAACGAGAGGAAAACGACGTCGGATTACGGTAATTTTCCCGGGAAATCGACGGAGGCTGAAGCGAGTGAGGAATTGAAGAAAGCATTAATGGGAGCAGCTGGTGGTAGTAGTGCTTGA
Predicted protein sequences of Glyma09g17240
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma09g17240.1 sequence type=predicted peptide gene model=Glyma09g17240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MKASLKFREEQQKPLLRAKVPLGILGMPFQSGIVAGESKELTLNLSTFFESGPSLKVAYRPNDSKNPFSFIVKTGTGPFGSPLKSSMLMSCEFNLPGTTGTPLFMLHFKPRFGDFTFKKTQSSIFDGKGFGSFNTQNDAVENGNNAETPLMESAKVSILDSGASMFSGMEVAARTTLPVRGRAAVKFRWGVRIPAEFKGNNAFQKIPFLVMDKIGVEHMMECGDSKKGKGDAGEKPRVPASADVAEACFAVKRQMEVLQAENGLLRNAVEDLRREIVGGRSGGSILGKNPKKNERKTTSDYGNFPGKSTEAEASEELKKALMGAAGGSSA*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
