SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma09g17200): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma09g17200): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma09g17200

Feature Type:gene_model
Chromosome:Gm09
Start:20992208
stop:20993817
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g17200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G06760AT Annotation by Michelle Graham. TAIR10: Late Embryogenesis Abundant 4-5 | chr5:2089754-2090313 REVERSE LENGTH=158 SoyBaseE_val: 1.00E-19ISS
GO:0006970GO-bp Annotation by Michelle Graham. GO Biological Process: response to osmotic stress SoyBaseN/AISS
GO:0009409GO-bp Annotation by Michelle Graham. GO Biological Process: response to cold SoyBaseN/AISS
GO:0009414GO-bp Annotation by Michelle Graham. GO Biological Process: response to water deprivation SoyBaseN/AISS
GO:0009790GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0048316GO-bp Annotation by Michelle Graham. GO Biological Process: seed development SoyBaseN/AISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF03760PFAM Late embryogenesis abundant (LEA) group 1 JGI ISS
UniRef100_I1L2M6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L2M6_SOYBN SoyBaseE_val: 2.00E-157ISS
UniRef100_Q9FT28UniRef Annotation by Michelle Graham. Most informative UniRef hit: Seed maturation protein n=1 Tax=Glycine tomentella RepID=Q9FT28_GLYTO SoyBaseE_val: 2.00E-27ISS

Expression Patterns of Glyma09g17200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g17200 not represented in the dataset
Glyma09g17200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma09g17200 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g112100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g17200
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g17200
>Glyma09g17200.1   sequence type=CDS   gene model=Glyma09g17200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGGCAGCAAAGAAAGCCATAGAGACCTTTAAGGAAACCGCAGCCAACATTGGCGCCTCTGCCAAGTCTGGCTTGGAGAAAACCAAGGCCACTATCCAAGAGAAGAATGAGAAGATGAATGCAGAAGATCAAACTCAAATGGATATGGCTACCAAGAGGAAAGAAGAGAAGATCAACCAGGCTGAGATGGAGAAGCAGCAGGCCCGTAAGTACTACGCCGCTGCAAAACAATACGCCATGGCTGAGCACATGGCAAAGGGCAACCACGACACCGCCGGGCCTAGAATCGAGACTGCCACACACATCACCAGTGGGCCCGGGACTGACAATGCTATGTACTCTAACACTGGGCCTGGGACTGAGACTGCCACGTACACCACTAGTGGGCTTGGGCATGACAATGCTATACCCACCAGCACTGGGCCTGGGACTGCCACATATACCACAAGGCCTGGGCATGACAATGCTATACCCATAAGAACTGGGCCTGGGCCTGGGCCTGAGACTGCCACCTACCCCACTGGTGACTATGGACAAATGGGGGCTAACCAGGGCCATGAGCATGGACCCAGGCAAGGAGGACTCACTGAAGATGTAACGGCCCAAAATACCCTTGTTGCAGGTGGCAGTGCTCCTTCAAGTGGGCCTGGGCCTACTTTCAATTGA
Predicted protein sequences of Glyma09g17200
>Glyma09g17200.1   sequence type=predicted peptide   gene model=Glyma09g17200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQAAKKAIETFKETAANIGASAKSGLEKTKATIQEKNEKMNAEDQTQMDMATKRKEEKINQAEMEKQQARKYYAAAKQYAMAEHMAKGNHDTAGPRIETATHITSGPGTDNAMYSNTGPGTETATYTTSGLGHDNAIPTSTGPGTATYTTRPGHDNAIPIRTGPGPGPETATYPTGDYGQMGANQGHEHGPRQGGLTEDVTAQNTLVAGGSAPSSGPGPTFN*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo