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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G42130 | AT | Annotation by Michelle Graham. TAIR10: Plastid-lipid associated protein PAP / fibrillin family protein | chr2:17566242-17567916 FORWARD LENGTH=299 | SoyBase | E_val: 2.00E-139 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0010027 | GO-bp | Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization | SoyBase | N/A | ISS |
| GO:0019288 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009534 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0009579 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: thylakoid | SoyBase | N/A | ISS |
| GO:0010287 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastoglobule | SoyBase | N/A | ISS |
| GO:0005198 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: structural molecule activity | SoyBase | N/A | ISS |
| PF04755 | PFAM | PAP fibrillin | JGI | ISS | |
| UniRef100_H2DL86 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Plastid lipid-associated protein n=1 Tax=Vitis pseudoreticulata RepID=H2DL86_9ROSI | SoyBase | E_val: 6.00E-140 | ISS |
| UniRef100_I1L2M2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L2M2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma09g17130 not represented in the dataset |
Glyma09g17130 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g29260 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g111700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g17130.2 sequence type=transcript gene model=Glyma09g17130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CGATCGTCGACCAGACACCAAAACCAGAAACCAACGTGGCGTTTGGTCGGGATTAGGACAAAGGAAGGTAAAGTCGAAAACTTTCCAGTAAAAAACCGGTGCGATTCGCCCATTCCATTCGTGTTGCTTATCAGTATTTTACTATTGTTTTTTCAACTCACGATTCTTGAGTGATGACAAATTGAAGAAGCACTACCATTAGTCTTAAACTCTTAATTAAAGAGACACACCATTCATTCATTCATTCACTCATTTCATTTCAAACAATGTCAATGGCTGCTTCAGCTTCTTCCCATGCTTGTGTTTCCCCAATCGCCACATGCATCCCTTCTTCCTCTTCCAAATTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTATTGTTCTTGGCTGACACTTTCTTCGCCCCAAAGAGTTGGCTCAAATAAGAGATGGGGATGCAGAGCCATGGTTCAGCAAGCCGTTCAGGGTGCTCCTGCTGCGTATGCCAAAGAAATGGAACGACTTTCCGCCAAAGAATCGCTTCTTCTCGCTTTTAAAGATGCAGGGGGTTTCGAGGCCTTGGTCTCTGGGAAGACTACTGAATGGCAAAAGATTGATGTGAATGAAAGGATAACTGGTCTTGAGCGGCTCAATCCAACACCTCGCCCCACAACGTCACCCTTCTTGGAGGGGCGATGGAACTTTGAGTGGTTTGGTTCTGGAAGTCCAGGCTTGTTTGCTGCTAGGTTTATATTTGAAATCTTTCCTTCAACTTTGGCTAATTTGTCAAAAATGGATTTTGTTATTAAGGATGGAAATGCGAAGATTACTGCGAACATGAGATTATTAAACTCGATAGAAAACAAAGTCATTCTCTCAACCAAATTATCTGTGGAGGGGCCACTTAGAATGAAAGAAGAGTATGTTGAAGGGGTTTTCGTGACACCAACAATTATTGAAGAGAGAGTACCAGAACAGCTTAAAGGGGCACTTGGGCAGGCAGCTAATGCTTTACAACAACTTCCTGCCCCTATACGCGATCCTGTTGCTAGTGGGCTGAAAGTTCCTCTAAATAATAAGGAACACGGCCGGGATTCCTGAAGTTTTAACGAGGTTGGATGCAGCACCGTCTATCTTGGGAGATTCAAGTCCAGAGTATGAGAGCTAGGAAATGGGAAGTGAAATTTTGTCCCAGCTTAATCATGTTGATGAATCAAATTCTTGTTCCTCTCAGCAGCCATGGACAGCTTCTGTTTCTTTCTCACTGAAAACTCCTTTTGGTTTTTCTACAGAGGGTAGAATGTGAATATGGGTTGAAGCCTGACAAAAATTCTTACAAAACCTTGTATTTCATTCTTAGTTTCACAACAAAGTGGTTCTTTGATGTAGAAATTGCATAATGCTACTCATGCAACCACCAATAGTGAAATAAAATGCAAAATATATCTCTGCCTGTGATCCATATAGATATTCCATAGAAATTCTCTGGCCTTTATTTTTGTTGTCTTATTTTTAATTTATTTCTGGCTGAAACAACCAGTTGGGTCAGTGCATGTGATTCTAGAAAAAAATAAATAAATTTTATACTAACATCTATTTTGTTTGT
>Glyma09g17130.1 sequence type=CDS gene model=Glyma09g17130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCAATGGCTGCTTCAGCTTCTTCCCATGCTTGTGTTTCCCCAATCGCCACATGCATCCCTTCTTCCTCTTCCAAATTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTATTGTTCTTGGCTGACACTTTCTTCGCCCCAAAGAGTTGGCTCAAATAAGAGATGGGGATGCAGAGCCATGGTTCAGCAAGCCGTTCAGGGTGCTCCTGCTGCGTATGCCAAAGAAATGGAACGACTTTCCGCCAAAGAATCGCTTCTTCTCGCTTTTAAAGATGCAGGGGGTTTCGAGGCCTTGGTCTCTGGGAAGACTACTGAATGGCAAAAGATTGATGTGAATGAAAGGATAACTGGTCTTGAGCGGCTCAATCCAACACCTCGCCCCACAACGTCACCCTTCTTGGAGGGGCGATGGAACTTTGAGTGGTTTGGTTCTGGAAGTCCAGGCTTGTTTGCTGCTAGGTTTATATTTGAAATCTTTCCTTCAACTTTGGCTAATTTGTCAAAAATGGATTTTGTTATTAAGGATGGAAATGCGAAGATTACTGCGAACATGAGATTATTAAACTCGATAGAAAACAAAGTCATTCTCTCAACCAAATTATCTGTGGAGGGGCCACTTAGAATGAAAGAAGAGTATGTTGAAGGGGTTTTCGTGACACCAACAATTATTGAAGAGAGAGTACCAGAACAGCTTAAAGGGGCACTTGGGCAGGCAGCTAATGCTTTACAACAACTTCCTGCCCCTATACGCGATCCTGTTGCTAGTGGGCTGAAAGTTCCTCTAAGTGGAAGCTTTCAGAGACTCTTCATGATTTCTTATCTCGATGAGGAGATACTTATAATAAGGAACACGGCCGGGATTCCTGAAGTTTTAACGAGGTTGGATGCAGCACCGTCTATCTTGGGAGATTCAAGTCCAGAGTATGAGAGCTAG >Glyma09g17130.2 sequence type=CDS gene model=Glyma09g17130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCAATGGCTGCTTCAGCTTCTTCCCATGCTTGTGTTTCCCCAATCGCCACATGCATCCCTTCTTCCTCTTCCAAATTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTATTGTTCTTGGCTGACACTTTCTTCGCCCCAAAGAGTTGGCTCAAATAAGAGATGGGGATGCAGAGCCATGGTTCAGCAAGCCGTTCAGGGTGCTCCTGCTGCGTATGCCAAAGAAATGGAACGACTTTCCGCCAAAGAATCGCTTCTTCTCGCTTTTAAAGATGCAGGGGGTTTCGAGGCCTTGGTCTCTGGGAAGACTACTGAATGGCAAAAGATTGATGTGAATGAAAGGATAACTGGTCTTGAGCGGCTCAATCCAACACCTCGCCCCACAACGTCACCCTTCTTGGAGGGGCGATGGAACTTTGAGTGGTTTGGTTCTGGAAGTCCAGGCTTGTTTGCTGCTAGGTTTATATTTGAAATCTTTCCTTCAACTTTGGCTAATTTGTCAAAAATGGATTTTGTTATTAAGGATGGAAATGCGAAGATTACTGCGAACATGAGATTATTAAACTCGATAGAAAACAAAGTCATTCTCTCAACCAAATTATCTGTGGAGGGGCCACTTAGAATGAAAGAAGAGTATGTTGAAGGGGTTTTCGTGACACCAACAATTATTGAAGAGAGAGTACCAGAACAGCTTAAAGGGGCACTTGGGCAGGCAGCTAATGCTTTACAACAACTTCCTGCCCCTATACGCGATCCTGTTGCTAGTGGGCTGAAAGTTCCTCTAAATAATAAGGAACACGGCCGGGATTCCTGA
>Glyma09g17130.1 sequence type=predicted peptide gene model=Glyma09g17130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSMAASASSHACVSPIATCIPSSSSKFSSSSSSSSSYCSWLTLSSPQRVGSNKRWGCRAMVQQAVQGAPAAYAKEMERLSAKESLLLAFKDAGGFEALVSGKTTEWQKIDVNERITGLERLNPTPRPTTSPFLEGRWNFEWFGSGSPGLFAARFIFEIFPSTLANLSKMDFVIKDGNAKITANMRLLNSIENKVILSTKLSVEGPLRMKEEYVEGVFVTPTIIEERVPEQLKGALGQAANALQQLPAPIRDPVASGLKVPLSGSFQRLFMISYLDEEILIIRNTAGIPEVLTRLDAAPSILGDSSPEYES* >Glyma09g17130.2 sequence type=predicted peptide gene model=Glyma09g17130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSMAASASSHACVSPIATCIPSSSSKFSSSSSSSSSYCSWLTLSSPQRVGSNKRWGCRAMVQQAVQGAPAAYAKEMERLSAKESLLLAFKDAGGFEALVSGKTTEWQKIDVNERITGLERLNPTPRPTTSPFLEGRWNFEWFGSGSPGLFAARFIFEIFPSTLANLSKMDFVIKDGNAKITANMRLLNSIENKVILSTKLSVEGPLRMKEEYVEGVFVTPTIIEERVPEQLKGALGQAANALQQLPAPIRDPVASGLKVPLNNKEHGRDS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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