Glyma09g17130 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma09g17130

Feature Type:	gene_model
Chromosome:	Gm09
Start:	20844458
stop:	20852204
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g17130

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G42130	AT	Annotation by Michelle Graham. TAIR10: Plastid-lipid associated protein PAP / fibrillin family protein \| chr2:17566242-17567916 FORWARD LENGTH=299	SoyBase	E_val: 2.00E-139	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0010027	GO-bp	Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization	SoyBase	N/A	ISS
GO:0019288	GO-bp	Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0010287	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastoglobule	SoyBase	N/A	ISS
GO:0005198	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural molecule activity	SoyBase	N/A	ISS
PF04755	PFAM	PAP fibrillin	JGI		ISS
UniRef100_H2DL86	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Plastid lipid-associated protein n=1 Tax=Vitis pseudoreticulata RepID=H2DL86_9ROSI	SoyBase	E_val: 6.00E-140	ISS
UniRef100_I1L2M2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L2M2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g17130

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g17130

Paralog	Evidence	Comments
Glyma02g29260	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g17130 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g111700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g17130

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g17130

Limit To All Plant Sequences

>Glyma09g17130.2   sequence type=transcript   gene model=Glyma09g17130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGATCGTCGACCAGACACCAAAACCAGAAACCAACGTGGCGTTTGGTCGGGATTAGGACAAAGGAAGGTAAAGTCGAAAACTTTCCAGTAAAAAACCGGTGCGATTCGCCCATTCCATTCGTGTTGCTTATCAGTATTTTACTATTGTTTTTTCAACTCACGATTCTTGAGTGATGACAAATTGAAGAAGCACTACCATTAGTCTTAAACTCTTAATTAAAGAGACACACCATTCATTCATTCATTCACTCATTTCATTTCAAACAATGTCAATGGCTGCTTCAGCTTCTTCCCATGCTTGTGTTTCCCCAATCGCCACATGCATCCCTTCTTCCTCTTCCAAATTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTATTGTTCTTGGCTGACACTTTCTTCGCCCCAAAGAGTTGGCTCAAATAAGAGATGGGGATGCAGAGCCATGGTTCAGCAAGCCGTTCAGGGTGCTCCTGCTGCGTATGCCAAAGAAATGGAACGACTTTCCGCCAAAGAATCGCTTCTTCTCGCTTTTAAAGATGCAGGGGGTTTCGAGGCCTTGGTCTCTGGGAAGACTACTGAATGGCAAAAGATTGATGTGAATGAAAGGATAACTGGTCTTGAGCGGCTCAATCCAACACCTCGCCCCACAACGTCACCCTTCTTGGAGGGGCGATGGAACTTTGAGTGGTTTGGTTCTGGAAGTCCAGGCTTGTTTGCTGCTAGGTTTATATTTGAAATCTTTCCTTCAACTTTGGCTAATTTGTCAAAAATGGATTTTGTTATTAAGGATGGAAATGCGAAGATTACTGCGAACATGAGATTATTAAACTCGATAGAAAACAAAGTCATTCTCTCAACCAAATTATCTGTGGAGGGGCCACTTAGAATGAAAGAAGAGTATGTTGAAGGGGTTTTCGTGACACCAACAATTATTGAAGAGAGAGTACCAGAACAGCTTAAAGGGGCACTTGGGCAGGCAGCTAATGCTTTACAACAACTTCCTGCCCCTATACGCGATCCTGTTGCTAGTGGGCTGAAAGTTCCTCTAAATAATAAGGAACACGGCCGGGATTCCTGAAGTTTTAACGAGGTTGGATGCAGCACCGTCTATCTTGGGAGATTCAAGTCCAGAGTATGAGAGCTAGGAAATGGGAAGTGAAATTTTGTCCCAGCTTAATCATGTTGATGAATCAAATTCTTGTTCCTCTCAGCAGCCATGGACAGCTTCTGTTTCTTTCTCACTGAAAACTCCTTTTGGTTTTTCTACAGAGGGTAGAATGTGAATATGGGTTGAAGCCTGACAAAAATTCTTACAAAACCTTGTATTTCATTCTTAGTTTCACAACAAAGTGGTTCTTTGATGTAGAAATTGCATAATGCTACTCATGCAACCACCAATAGTGAAATAAAATGCAAAATATATCTCTGCCTGTGATCCATATAGATATTCCATAGAAATTCTCTGGCCTTTATTTTTGTTGTCTTATTTTTAATTTATTTCTGGCTGAAACAACCAGTTGGGTCAGTGCATGTGATTCTAGAAAAAAATAAATAAATTTTATACTAACATCTATTTTGTTTGT

Coding sequences of Glyma09g17130

Limit To All Plant Sequences

>Glyma09g17130.1   sequence type=CDS   gene model=Glyma09g17130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAATGGCTGCTTCAGCTTCTTCCCATGCTTGTGTTTCCCCAATCGCCACATGCATCCCTTCTTCCTCTTCCAAATTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTATTGTTCTTGGCTGACACTTTCTTCGCCCCAAAGAGTTGGCTCAAATAAGAGATGGGGATGCAGAGCCATGGTTCAGCAAGCCGTTCAGGGTGCTCCTGCTGCGTATGCCAAAGAAATGGAACGACTTTCCGCCAAAGAATCGCTTCTTCTCGCTTTTAAAGATGCAGGGGGTTTCGAGGCCTTGGTCTCTGGGAAGACTACTGAATGGCAAAAGATTGATGTGAATGAAAGGATAACTGGTCTTGAGCGGCTCAATCCAACACCTCGCCCCACAACGTCACCCTTCTTGGAGGGGCGATGGAACTTTGAGTGGTTTGGTTCTGGAAGTCCAGGCTTGTTTGCTGCTAGGTTTATATTTGAAATCTTTCCTTCAACTTTGGCTAATTTGTCAAAAATGGATTTTGTTATTAAGGATGGAAATGCGAAGATTACTGCGAACATGAGATTATTAAACTCGATAGAAAACAAAGTCATTCTCTCAACCAAATTATCTGTGGAGGGGCCACTTAGAATGAAAGAAGAGTATGTTGAAGGGGTTTTCGTGACACCAACAATTATTGAAGAGAGAGTACCAGAACAGCTTAAAGGGGCACTTGGGCAGGCAGCTAATGCTTTACAACAACTTCCTGCCCCTATACGCGATCCTGTTGCTAGTGGGCTGAAAGTTCCTCTAAGTGGAAGCTTTCAGAGACTCTTCATGATTTCTTATCTCGATGAGGAGATACTTATAATAAGGAACACGGCCGGGATTCCTGAAGTTTTAACGAGGTTGGATGCAGCACCGTCTATCTTGGGAGATTCAAGTCCAGAGTATGAGAGCTAG

>Glyma09g17130.2   sequence type=CDS   gene model=Glyma09g17130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAATGGCTGCTTCAGCTTCTTCCCATGCTTGTGTTTCCCCAATCGCCACATGCATCCCTTCTTCCTCTTCCAAATTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTATTGTTCTTGGCTGACACTTTCTTCGCCCCAAAGAGTTGGCTCAAATAAGAGATGGGGATGCAGAGCCATGGTTCAGCAAGCCGTTCAGGGTGCTCCTGCTGCGTATGCCAAAGAAATGGAACGACTTTCCGCCAAAGAATCGCTTCTTCTCGCTTTTAAAGATGCAGGGGGTTTCGAGGCCTTGGTCTCTGGGAAGACTACTGAATGGCAAAAGATTGATGTGAATGAAAGGATAACTGGTCTTGAGCGGCTCAATCCAACACCTCGCCCCACAACGTCACCCTTCTTGGAGGGGCGATGGAACTTTGAGTGGTTTGGTTCTGGAAGTCCAGGCTTGTTTGCTGCTAGGTTTATATTTGAAATCTTTCCTTCAACTTTGGCTAATTTGTCAAAAATGGATTTTGTTATTAAGGATGGAAATGCGAAGATTACTGCGAACATGAGATTATTAAACTCGATAGAAAACAAAGTCATTCTCTCAACCAAATTATCTGTGGAGGGGCCACTTAGAATGAAAGAAGAGTATGTTGAAGGGGTTTTCGTGACACCAACAATTATTGAAGAGAGAGTACCAGAACAGCTTAAAGGGGCACTTGGGCAGGCAGCTAATGCTTTACAACAACTTCCTGCCCCTATACGCGATCCTGTTGCTAGTGGGCTGAAAGTTCCTCTAAATAATAAGGAACACGGCCGGGATTCCTGA

Predicted protein sequences of Glyma09g17130

Limit To All Plant Sequences

>Glyma09g17130.1   sequence type=predicted peptide   gene model=Glyma09g17130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSMAASASSHACVSPIATCIPSSSSKFSSSSSSSSSYCSWLTLSSPQRVGSNKRWGCRAMVQQAVQGAPAAYAKEMERLSAKESLLLAFKDAGGFEALVSGKTTEWQKIDVNERITGLERLNPTPRPTTSPFLEGRWNFEWFGSGSPGLFAARFIFEIFPSTLANLSKMDFVIKDGNAKITANMRLLNSIENKVILSTKLSVEGPLRMKEEYVEGVFVTPTIIEERVPEQLKGALGQAANALQQLPAPIRDPVASGLKVPLSGSFQRLFMISYLDEEILIIRNTAGIPEVLTRLDAAPSILGDSSPEYES*

>Glyma09g17130.2   sequence type=predicted peptide   gene model=Glyma09g17130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSMAASASSHACVSPIATCIPSSSSKFSSSSSSSSSYCSWLTLSSPQRVGSNKRWGCRAMVQQAVQGAPAAYAKEMERLSAKESLLLAFKDAGGFEALVSGKTTEWQKIDVNERITGLERLNPTPRPTTSPFLEGRWNFEWFGSGSPGLFAARFIFEIFPSTLANLSKMDFVIKDGNAKITANMRLLNSIENKVILSTKLSVEGPLRMKEEYVEGVFVTPTIIEERVPEQLKGALGQAANALQQLPAPIRDPVASGLKVPLNNKEHGRDS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain