Glyma09g17115 - SoyBase

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Report for Sequence Feature Glyma09g17115

Feature Type:	gene_model
Chromosome:	Gm09
Start:	20840589
stop:	20841525
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g17115

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
ATCG00790	AT	Annotation by Michelle Graham. TAIR10: ribosomal protein L16 \| chrC:81189-82652 REVERSE LENGTH=135	SoyBase	E_val: 1.00E-20	ISS
GO:0006091	GO-bp	Annotation by Michelle Graham. GO Biological Process: generation of precursor metabolites and energy	SoyBase	N/A	ISS
GO:0006354	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, elongation	SoyBase	N/A	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0015979	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis	SoyBase	N/A	ISS
GO:0019684	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction	SoyBase	N/A	ISS
GO:0000311	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid large ribosomal subunit	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
GO:0019843	GO-mf	Annotation by Michelle Graham. GO Molecular Function: rRNA binding	SoyBase	N/A	ISS
PTHR12220	Panther	50S/60S RIBOSOMAL PROTEIN L16	JGI		ISS
PTHR12220:SF13	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00252	PFAM	Ribosomal protein L16p/L10e	JGI		ISS
UniRef100_D3WD20	UniRef	Annotation by Michelle Graham. Best UniRef hit: 50S ribosomal protein L16, chloroplastic n=1 Tax=Ximenia americana RepID=D3WD20_XIMAM	SoyBase	E_val: 2.00E-19	ISS
UniRef100_D3WD20	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 50S ribosomal protein L16, chloroplastic n=1 Tax=Ximenia americana RepID=D3WD20_XIMAM	SoyBase	E_val: 2.00E-19	ISS

Expression Patterns of Glyma09g17115

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g17115 not represented in the dataset	Glyma09g17115 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma09g17115 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g111600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g17115

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g17115

Limit To All Plant Sequences

>Glyma09g17115.1   sequence type=CDS   gene model=Glyma09g17115   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAACCAATGCATGGTGGCCTTGCTTGATGGTCGGAGGGGGGAGTGTCGTTGCTGTCACGACAGTGAGGAAGAAGGAAGTAGTGAAGAATGGTCGTAAATCACACTGTGGACTAATATGGGTACACATATTTCCAGACAAATCGGTTACAGTAAGACCTACTGAAACATGTATGGGTTCAGGAAAAGATTCTCCCAAATATTGGGTAGCTGTCATTATACCAAGGAAAATACTTTATGAAATAGGTGGGGTACCATAA

Predicted protein sequences of Glyma09g17115

Limit To All Plant Sequences

>Glyma09g17115.1   sequence type=predicted peptide   gene model=Glyma09g17115   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METNAWWPCLMVGGGSVVAVTTVRKKEVVKNGRKSHCGLIWVHIFPDKSVTVRPTETCMGSGKDSPKYWVAVIIPRKILYEIGGVP*

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