Glyma09g17080 - SoyBase

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Report for Sequence Feature Glyma09g17080

Feature Type:	gene_model
Chromosome:	Gm09
Start:	20804051
stop:	20807444
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g17080

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G04600	AT	Annotation by Michelle Graham. TAIR10: RNA-binding (RRM/RBD/RNP motifs) family protein \| chr5:1323700-1325486 FORWARD LENGTH=222	SoyBase	E_val: 2.00E-95	ISS
GO:0001510	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA methylation	SoyBase	N/A	ISS
GO:0006333	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin assembly or disassembly	SoyBase	N/A	ISS
GO:0006606	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into nucleus	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0051604	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein maturation	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
KOG4208	KOG	Nucleolar RNA-binding protein NIFK	JGI		ISS
PTHR23365	Panther	POLY-A BINDING PROTEIN 2	JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
UniRef100_B9SY14	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Poly-A binding protein, putative n=1 Tax=Ricinus communis RepID=B9SY14_RICCO	SoyBase	E_val: 7.00E-108	ISS
UniRef100_I1L2M0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L2M0_SOYBN	SoyBase	E_val: 5.00E-155	ISS

Expression Patterns of Glyma09g17080

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g17080

Paralog	Evidence	Comments
Glyma02g29190	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g17080 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g111400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g17080

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g17080

Limit To All Plant Sequences

>Glyma09g17080.4   sequence type=transcript   gene model=Glyma09g17080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATATCATGTATAATTTGATGATAATAGATTTTGTATTCTTCCTCTGAAGCCATAACCTAACCTTAAAAGGCTAAAACCTTTTGTGTTTGCGCCGCTCTAAAGCCAAGCCTGAGACTCGCGACTCACCACCACTGCTCGCCGGCCTCTAATTTTGAAAGCTTCTGCGCCTCCCACGCCATTTTTGATACTCTCTTTGTGTTCGCATAGTGAGATATGGGGAAGAAGGCGAAGAAAGCTATGAAGAAGAATTTGAAAAGGGCTTCCTTTAATAAGAATCCATCTGAGGATGCTGATTTCTTGCCCTTGGAAGGTGGCCCTGCTCGTAAGCTCGCCGGCCAGCAGAAGCCGCCGCCGCCGCCGGAGAACACCGCCACGGTTTTGTACGTCGGTCGGATCCCACATGGGTTCTATGAGAAGGAGATGGAAGGTTATTTTGGGCAATTTGGAACCATTAAGAGGTTGAGAATCGCAAGAAATAAAAAGTCTGGAAAATCAAGACATTTTGGGTTCATAGAATTTGAATCTCCTGAGGTAGCAAAAATTGTGGCTGATACTATGCATAATTATCTCCTTTTTGAACACCTTCTCCAAGTTTATGTGATACCTCCAGAGCATGTTCATCCAAGAATATGGAGAGGATTCAATTACCATTACAAGCCATTGGATTCTGTCCAAATTGAACGGAAGCGTCATGACAAGGATAGAACATTGGAAGAGCACAAGAAGTTGGTGGAGAAGGTTCTGAAACATGACCAAAAACGACGTAAAAGGATAGAGGCTGCTGGGATTGATTATGAATGCCCTGAGATTGTGGGTAACATCCAACCTGCTCCAAAGAAAATAAAGTTTGAAGACTGAGTGGGTAACCTGTCTCATCATCTTTAAAAGATGATTTTTCTGCATATCCTGAAAGGTACTAGAGAACTTAATCAAAGTGAGGTTGTTTTGTTACCTTTCTTCCCTTAGATGTGTTAGAGTAAAACTGCTACTGCTGTTTTAGGACTTAGTATTAGCATTTAACTATTGTCAAGCCTTTGCAATTTTGGGACTTAATTCTGAAACCTTGTGTTCTCAGAAATATTTTATAGAAGCATTATCCGTTTCTTAATATTTTTCCCAGGAGGGTAGATTGTTAAGATTGCCAATCTGTTGAAATTGAATTCTAAAGATAGATAAAATTCCTTGAGGGGTTTGACCACATTGTGAACTCAATTGAATATACCTTAAAATTATTTTGTGATGAAGAGAATTATCCCGCGCTGAAGAGAAGTGAAATGGTTATTGTTTGA

Coding sequences of Glyma09g17080

Limit To All Plant Sequences

>Glyma09g17080.3   sequence type=CDS   gene model=Glyma09g17080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAAGAAGGCGAAGAAAGCTATGAAGAAGAATTTGAAAAGGGCTTCCTTTAATAAGAATCCATCTGAGGATGCTGATTTCTTGCCCTTGGAAGGTGGCCCTGCTCGTAAGCTCGCCGGCCAGCAGAAGCCGCCGCCGCCGCCGGAGAACACCGCCACGGTTTTGTACGTCGGTCGGATCCCACATGGGTTCTATGAGAAGGAGATGGAAGGTTATTTTGGGCAATTTGGAACCATTAAGAGGTTGAGAATCGCAAGAAATAAAAAGTCTGGAAAATCAAGACATTTTGGGTTCATAGAATTTGAATCTCCTGAGGTAGCAAAAATTGTGGCTGATACTATGCATAATTATCTCCTTTTTGAACACCTTCTCCAAGTTTATGTGATACCTCCAGAGCATGTTCATCCAAGAATATGGAGAGGATTCAATTACCATTACAAGCCATTGGATTCTGTCCAAATTGAACGGAAGCGTCATGACAAGGATAGAACATTGGAAGAGCACAAGAAGTTGGTGGAGAAGGTTCTGAAACATGACCAAAAACGACGTAAAAGGATAGAGGCTGCTGGGATTGATTATGAATGCCCTGAGATTGTGGGTAACATCCAACCTGCTCCAAAGAAAATAAAGTTTGAAGACTGA

>Glyma09g17080.4   sequence type=CDS   gene model=Glyma09g17080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAAGAAGGCGAAGAAAGCTATGAAGAAGAATTTGAAAAGGGCTTCCTTTAATAAGAATCCATCTGAGGATGCTGATTTCTTGCCCTTGGAAGGTGGCCCTGCTCGTAAGCTCGCCGGCCAGCAGAAGCCGCCGCCGCCGCCGGAGAACACCGCCACGGTTTTGTACGTCGGTCGGATCCCACATGGGTTCTATGAGAAGGAGATGGAAGGTTATTTTGGGCAATTTGGAACCATTAAGAGGTTGAGAATCGCAAGAAATAAAAAGTCTGGAAAATCAAGACATTTTGGGTTCATAGAATTTGAATCTCCTGAGGTAGCAAAAATTGTGGCTGATACTATGCATAATTATCTCCTTTTTGAACACCTTCTCCAAGTTTATGTGATACCTCCAGAGCATGTTCATCCAAGAATATGGAGAGGATTCAATTACCATTACAAGCCATTGGATTCTGTCCAAATTGAACGGAAGCGTCATGACAAGGATAGAACATTGGAAGAGCACAAGAAGTTGGTGGAGAAGGTTCTGAAACATGACCAAAAACGACGTAAAAGGATAGAGGCTGCTGGGATTGATTATGAATGCCCTGAGATTGTGGGTAACATCCAACCTGCTCCAAAGAAAATAAAGTTTGAAGACTGA

Predicted protein sequences of Glyma09g17080

Limit To All Plant Sequences

>Glyma09g17080.3   sequence type=predicted peptide   gene model=Glyma09g17080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKKAKKAMKKNLKRASFNKNPSEDADFLPLEGGPARKLAGQQKPPPPPENTATVLYVGRIPHGFYEKEMEGYFGQFGTIKRLRIARNKKSGKSRHFGFIEFESPEVAKIVADTMHNYLLFEHLLQVYVIPPEHVHPRIWRGFNYHYKPLDSVQIERKRHDKDRTLEEHKKLVEKVLKHDQKRRKRIEAAGIDYECPEIVGNIQPAPKKIKFED*

>Glyma09g17080.4   sequence type=predicted peptide   gene model=Glyma09g17080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKKAKKAMKKNLKRASFNKNPSEDADFLPLEGGPARKLAGQQKPPPPPENTATVLYVGRIPHGFYEKEMEGYFGQFGTIKRLRIARNKKSGKSRHFGFIEFESPEVAKIVADTMHNYLLFEHLLQVYVIPPEHVHPRIWRGFNYHYKPLDSVQIERKRHDKDRTLEEHKKLVEKVLKHDQKRRKRIEAAGIDYECPEIVGNIQPAPKKIKFED*

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