Glyma09g17010 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma09g17010): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma09g17010): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma09g17010

Feature Type:	gene_model
Chromosome:	Gm09
Start:	20738993
stop:	20742619
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g17010

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G42070	AT	Annotation by Michelle Graham. TAIR10: nudix hydrolase homolog 23 \| chr2:17549669-17551066 REVERSE LENGTH=280	SoyBase	E_val: 2.00E-118	ISS
GO:0009416	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to light stimulus	SoyBase	N/A	ISS
GO:0042726	GO-bp	Annotation by Michelle Graham. GO Biological Process: flavin-containing compound metabolic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
GO:0047884	GO-mf	Annotation by Michelle Graham. GO Molecular Function: FAD diphosphatase activity	SoyBase	N/A	ISS
PTHR22769	Panther	MUTT/NUDIX HYDROLASE	JGI		ISS
PF00293	PFAM	NUDIX domain	JGI		ISS
UniRef100_G7KVE3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nudix hydrolase n=2 Tax=Medicago truncatula RepID=G7KVE3_MEDTR	SoyBase	E_val: 4.00E-131	ISS
UniRef100_I1L2L5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L2L5_SOYBN	SoyBase	E_val: 1.00E-160	ISS

Expression Patterns of Glyma09g17010

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g17010 not represented in the dataset	Glyma09g17010 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g17010

Paralog	Evidence	Comments
Glyma02g29133	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g17010 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g111000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g17010

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g17010

Limit To All Plant Sequences

>Glyma09g17010.3   sequence type=transcript   gene model=Glyma09g17010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGTTACTCAAATGTCATTTTCTGTCGGAATTGGCTTATCTGCTGCTGAAATTTCAACGGCACCAATCTTCACCGTCCAAAAATGTTTTTTACACATTAAACTATAAAACAAAAATCCAAGTTTGTAAACTTTAAACGGTGAACTGCATATATCACAACTGTAGAGGATCGCTTTCATTTTTTGTTACCTCTCTGCAAATGCTTCAGCTCTTGACAACTTAGGTTGTTAATCCGCGTTTGTTGTTCAACATTGGTAACCTCGTACAAATCAAGTGCTGTTCTCTTTCCTTTCAATCTCATCATGGATTCTTCTTCTGATCATTCTCCCCCATCATCACTTCATTCTCCTGGAGATGTTCAAAACGTTAAATTCTGTCAGTGGTGTGGTGGTCCAACGAAGCATGAAATTCCTGAAGGAGAAGAAAGGTTGAGAGCTATTTGTACAAGTTGTGGGAAGATAACCTATCAGAATCCAAAAATGGTAGTCGGTTGCCTCATTGAACATGATAACAAGGTCCTCCTTTGCAAGCGGAAGATTGAACCATCTTATGGCCTATGGACACTTCCTGCGGGTTATTTAGAAATTGGAGAGTCGGCTATGGAAGGTGCTATCAGGGAAACACGGGAGGAAGCCAATGCTGACGTGGAAGTGATTTCTCCCTTTGCTCAATTGGATATTCCTTTAATTGGCCAAACTTATATAATCTTCTTAGCAAGGTTGAAGAAACCTCACTTTTCACCTGGTCCAGAATCATCAGAATGCCTGCTTTTCTCACTCAATGAAATACCTTTCAGTTCTCTATCTTTTTCATCAATGGTGGTTACTTTAAGTTTGTATGTTGAGGATATGAAAGCAGGAGGAAAGCCCAAATTCCATTATGGTACCATTAACAAAAGACCTGGTACTAGTGCATCTGATATTCATGCCTATACTCTGGATCATCACATGCAATCATGAACCATGACAAGCTGGAACTCCTCATAGCAAGTTTTTGGCATTAGATTCTGGAATCCAGTCAATTCATTTTTAAATCAGTAGCACTGGCATATAACATGAAAGATCCAAACATTACTGACTTAAGCCACCATTGTTCCAAGATTGATGGGCAAATGGCCCCAAGAAAGACATGTGTGTTCCTGTTGCTTGATGCAATGTTGCAATTCATGATCATTTGCACCCCCCTTCTCTTGATATATTATATCAGAATCAGATTGTTGTAAATTGTCAAAAAAATATTTTTGAAGAATGATCCTTCCTCTGTTTCAAAACCGGCATTATGCAACTGAGTGCTTATTTTCTAGATATTTGATGCTCAATACATCAGAATTTAAAAGCTTTTTTCCTGTGTTGGCAATTTTCTTTATCAAC

>Glyma09g17010.4   sequence type=transcript   gene model=Glyma09g17010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAACTGCATATATCACAACTGTAGAGGATCGCTTTCATTTTTTGTTACCTCTCTGCAAATGCTTCAGCTCTTGACAACTTAGGTTGTTAATCCGCGTTTGTTGTTCAACATTGGTAACCTCGTACAAATCAAGTGCTGTTCTCTTTCCTTTCAATCTCATCATGGATTCTTCTTCTGATCATTCTCCCCCATCATCACTTCATTCTCCTGGAGATGTTCAAAACGTTAAATTCTGTCAGTGGTGTGGTGGTCCAACGAAGCATGAAATTCCTGAAGGAGAAGAAAGGTTGAGAGCTATTTGTACAAGTTGTGGGAAGATAACCTATCAGAATCCAAAAATGGTAGTCGGTTGCCTCATTGAACATGATAACAAGGTCCTCCTTTGCAAGCGGAAGATTGAACCATCTTATGGCCTATGGACACTTCCTGCGGGTTATTTAGAAATTGGAGAGTCGGCTATGGAAGGTGCTATCAGGGAAACACGGGAGGAAGCCAATGCTGACGTGGAAGTGATTTCTCCCTTTGCTCAATTGGATATTCCTTTAATTGGCCAAACTTATATAATCTTCTTAGCAAGGTTGAAGAAACCTCACTTTTCACCTGGTCCAGAATCATCAGAATGCCTGCTTTTCTCACTCAATGAAATACCTTTCAGTTCTCTATCTTTTTCATCAATGGTGGTTACTTTAAGTTTGTATGTTGAGGATATGAAAGCAGGAGGAAAGCCCAAATTCCATTATGGTACCATTAACAAAAGACCTGGTACTAGTGCATCTGATATTCATGCCTATACTCTGGATCATCACATGCAATCATGAACCATGACAAGCTGGTTGTAAGTTGGAGATATTTGTTGAATCTTTCAGATGCTGTCTTCTTCAGGAACTCCTCATAGCAAGTTTTTGGCATTAGATTCTGGAATCCAGTCAATTCATTTTTAAATCAGTAGCACTGGCATATAACATGAAAGATCCAAACATTACTGACTTAAGCCACCATTGTTCCAAGATTGATGGGCAAATGGCCCCAAGAAAGACATGTGTGTTCCTGTTGCTTGATGCAATGTTGCAATTCATGATCATTTGCACCCCCCTTCTCTTGATATATTATATCAGAATCAGATTGTTGTAAATTGTCAAAAAAATATTTTTGAAGAATGATCCTTCCTCTGTTTCAAAACCGGCATTATGCAACTGAGTGCTTATTTTCTAGATATTTGATGCTCAATACATCAGAATTTAAAAGCT

Coding sequences of Glyma09g17010

Limit To All Plant Sequences

>Glyma09g17010.2   sequence type=CDS   gene model=Glyma09g17010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCTTCTTCTGATCATTCTCCCCCATCATCACTTCATTCTCCTGGAGATGTTCAAAACGTTAAATTCTGTCAGTGGTGTGGTGGTCCAACGAAGCATGAAATTCCTGAAGGAGAAGAAAGGTTGAGAGCTATTTGTACAAGTTGTGGGAAGATAACCTATCAGAATCCAAAAATGGTAGTCGGTTGCCTCATTGAACATGATAACAAGGTCCTCCTTTGCAAGCGGAAGATTGAACCATCTTATGGCCTATGGACACTTCCTGCGGGTTATTTAGAAATTGGAGAGTCGGCTATGGAAGGTGCTATCAGGGAAACACGGGAGGAAGCCAATGCTGACGTGGAAGTGATTTCTCCCTTTGCTCAATTGGATATTCCTTTAATTGGCCAAACTTATATAATCTTCTTAGCAAGGTTGAAGAAACCTCACTTTTCACCTGGTCCAGAATCATCAGAATGCCTGCTTTTCTCACTCAATGAAATACCTTTCAGTTCTCTATCTTTTTCATCAATGGTGGTTACTTTAAGTTTGTATGTTGAGGATATGAAAGCAGGAGGAAAGCCCAAATTCCATTATGGTACCATTAACAAAAGACCTGGTACTAGTGCATCTGATATTCATGCCTATACTCTGGATCATCACATGCAATCATGA

>Glyma09g17010.3   sequence type=CDS   gene model=Glyma09g17010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCTTCTTCTGATCATTCTCCCCCATCATCACTTCATTCTCCTGGAGATGTTCAAAACGTTAAATTCTGTCAGTGGTGTGGTGGTCCAACGAAGCATGAAATTCCTGAAGGAGAAGAAAGGTTGAGAGCTATTTGTACAAGTTGTGGGAAGATAACCTATCAGAATCCAAAAATGGTAGTCGGTTGCCTCATTGAACATGATAACAAGGTCCTCCTTTGCAAGCGGAAGATTGAACCATCTTATGGCCTATGGACACTTCCTGCGGGTTATTTAGAAATTGGAGAGTCGGCTATGGAAGGTGCTATCAGGGAAACACGGGAGGAAGCCAATGCTGACGTGGAAGTGATTTCTCCCTTTGCTCAATTGGATATTCCTTTAATTGGCCAAACTTATATAATCTTCTTAGCAAGGTTGAAGAAACCTCACTTTTCACCTGGTCCAGAATCATCAGAATGCCTGCTTTTCTCACTCAATGAAATACCTTTCAGTTCTCTATCTTTTTCATCAATGGTGGTTACTTTAAGTTTGTATGTTGAGGATATGAAAGCAGGAGGAAAGCCCAAATTCCATTATGGTACCATTAACAAAAGACCTGGTACTAGTGCATCTGATATTCATGCCTATACTCTGGATCATCACATGCAATCATGA

>Glyma09g17010.4   sequence type=CDS   gene model=Glyma09g17010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCTTCTTCTGATCATTCTCCCCCATCATCACTTCATTCTCCTGGAGATGTTCAAAACGTTAAATTCTGTCAGTGGTGTGGTGGTCCAACGAAGCATGAAATTCCTGAAGGAGAAGAAAGGTTGAGAGCTATTTGTACAAGTTGTGGGAAGATAACCTATCAGAATCCAAAAATGGTAGTCGGTTGCCTCATTGAACATGATAACAAGGTCCTCCTTTGCAAGCGGAAGATTGAACCATCTTATGGCCTATGGACACTTCCTGCGGGTTATTTAGAAATTGGAGAGTCGGCTATGGAAGGTGCTATCAGGGAAACACGGGAGGAAGCCAATGCTGACGTGGAAGTGATTTCTCCCTTTGCTCAATTGGATATTCCTTTAATTGGCCAAACTTATATAATCTTCTTAGCAAGGTTGAAGAAACCTCACTTTTCACCTGGTCCAGAATCATCAGAATGCCTGCTTTTCTCACTCAATGAAATACCTTTCAGTTCTCTATCTTTTTCATCAATGGTGGTTACTTTAAGTTTGTATGTTGAGGATATGAAAGCAGGAGGAAAGCCCAAATTCCATTATGGTACCATTAACAAAAGACCTGGTACTAGTGCATCTGATATTCATGCCTATACTCTGGATCATCACATGCAATCATGA

Predicted protein sequences of Glyma09g17010

Limit To All Plant Sequences

>Glyma09g17010.2   sequence type=predicted peptide   gene model=Glyma09g17010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSSSDHSPPSSLHSPGDVQNVKFCQWCGGPTKHEIPEGEERLRAICTSCGKITYQNPKMVVGCLIEHDNKVLLCKRKIEPSYGLWTLPAGYLEIGESAMEGAIRETREEANADVEVISPFAQLDIPLIGQTYIIFLARLKKPHFSPGPESSECLLFSLNEIPFSSLSFSSMVVTLSLYVEDMKAGGKPKFHYGTINKRPGTSASDIHAYTLDHHMQS*

>Glyma09g17010.3   sequence type=predicted peptide   gene model=Glyma09g17010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSSSDHSPPSSLHSPGDVQNVKFCQWCGGPTKHEIPEGEERLRAICTSCGKITYQNPKMVVGCLIEHDNKVLLCKRKIEPSYGLWTLPAGYLEIGESAMEGAIRETREEANADVEVISPFAQLDIPLIGQTYIIFLARLKKPHFSPGPESSECLLFSLNEIPFSSLSFSSMVVTLSLYVEDMKAGGKPKFHYGTINKRPGTSASDIHAYTLDHHMQS*

>Glyma09g17010.4   sequence type=predicted peptide   gene model=Glyma09g17010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSSSDHSPPSSLHSPGDVQNVKFCQWCGGPTKHEIPEGEERLRAICTSCGKITYQNPKMVVGCLIEHDNKVLLCKRKIEPSYGLWTLPAGYLEIGESAMEGAIRETREEANADVEVISPFAQLDIPLIGQTYIIFLARLKKPHFSPGPESSECLLFSLNEIPFSSLSFSSMVVTLSLYVEDMKAGGKPKFHYGTINKRPGTSASDIHAYTLDHHMQS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain