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Report for Sequence Feature Glyma09g16780

Feature Type:gene_model
Chromosome:Gm09
Start:20196118
stop:20199921
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g16780
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G06700AT Annotation by Michelle Graham. TAIR10: Plant protein of unknown function (DUF828) | chr5:2063638-2065810 FORWARD LENGTH=608 SoyBaseE_val: 0ISS
GO:0009827GO-bp Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification SoyBaseN/AISS
GO:0009834GO-bp Annotation by Michelle Graham. GO Biological Process: secondary cell wall biogenesis SoyBaseN/AISS
GO:0030244GO-bp Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process SoyBaseN/AISS
GO:0045489GO-bp Annotation by Michelle Graham. GO Biological Process: pectin biosynthetic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005768GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endosome SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005802GO-cc Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR13533Panther FAMILY NOT NAMED JGI ISS
PTHR13533:SF3Panther gb def: unknown protein [takifugu rubripes] JGI ISS
PF03005PFAM Arabidopsis proteins of unknown function JGI ISS
UniRef100_Q9FG35UniRef Annotation by Michelle Graham. Most informative UniRef hit: Emb|CAB82953.1 n=1 Tax=Arabidopsis thaliana RepID=Q9FG35_ARATH SoyBaseE_val: 0ISS
UniRef100_UPI000233C1B3UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233C1B3 related cluster n=1 Tax=unknown RepID=UPI000233C1B3 SoyBaseE_val: 0ISS

Expression Patterns of Glyma09g16780
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g16780
ParalogEvidenceComments
Glyma02g28845 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g16780 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g109600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g16780
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g16780
>Glyma09g16780.2   sequence type=CDS   gene model=Glyma09g16780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGATTCCACTAAGTACATTCCCATAGGTGGCACCCTCAAATCAAACCTCAAGACCCTCTTCCCCATTTTCAAAACCAGAAAAACACTGACTTTTGCATATGCTTTTTCCTTCACCTTTGTTGCTTTCACTGTTTTCCTTGCCTTTTGCCCCTCTCCAAACACCTCCTCTCCCTTCTTCACCAACATATTCTCCTCCACTGCCACCACCACTTCCTCTGCTAGTTCATACAAGTCCCAACTCTCTTCCATTTTCTCTTTCTTCTTCCACAACTCCACCACTCCATCTTCAAATTCCTCAAGTTCTACCTTTAACACCAACACCACTAGATCTAGCAATAGCACTTCTCAATCCCCTCAAACAAGTAAAAAGACATTCAAAATCACCCCTTTTGAAAACCAAACTCGAACTACTCCTCCACCACTTACAAGAAAGATACCAAGTGATCATGTTGTGACTAAGGAACCATCAAGTGCTAACAACAATCATACCCGAGTTTCTGATGAGGCTAAAGCTGTAAAGAAGACAAATCAGTCTTCTAATGGTGTTGTTCCTGCTGCTGCACCCAAGGTTTCAGGGGTAGGTTCAAATAAGAATTTGAGTTCTTTGGTGAATGGAGGGGGCACAGAGAAGGATGTTGTGCATAGTAATTACACGGCTTCGAGAGTGAAGGATGAGATGATGGAGTCTTTGATCAAGTGTGATTTTTTTGATGGGGAATGGGTTAAGGATGATTCCTATCCCCTCTATGAACCTGGTTCTTGCAATATTGTCGATGAACAGTTCCATTGTATCCAAAATGGAAGACCTGATAAAGACTTCCAGAAATATAAGTGGAAGCCAAAGGGATGCAACCTCCCTAGGTTGGATGGACATATAATGCTGGATATGTTGAGAGGCAAGAGGCTAATTTTTGTTGGTGATTCCATCAATAGGAATATGTGGGAATCTCTAATTTGCATCCTGAGAAACGCTGTGAAAGACAAAAGCAAAGTCTATGAAGCAAATGGAAGAGTCCATTTCAGAGGGGAAGCCTCTTATTCATTCGTATTCAAAGATTATAACTTCTCAGTGGAGCTTTTCGTATCTCCATTCTTAGTTCAGGAATGGGAAGTTCAAATCAAGAATGGAACAAAGAAAGAAACACTTCGTCTTGATTTAGTTGGTAAATCTTCAGTTCAATATAAAAATGCAGATATAATCATCTTCAACACCGGTCACTGGTGGACTCATGATAAGACTTCTAAAGGGAAGGACTATTACCAAGAGGGTAGCCATGTCTATGATGAGCTGAATGTTTTGGAGGCATTTCGAAGGGCTATAACAACTTGGAGTAGATGGATCGATGCCAACATAAATCCATCTAAGTCTATGGTCTTCTTCAGAGGCTATTCTGCTTCACATTTCAGTGGGGGGCAATGGAATTCTGGTGGACAATGTGACAGTGAAACTGTGCCTATCAAGAATGAGAAGTACTTGAGAGAATACCCCCCTAAGATGAGGGTATTGGAAAAGGTTTTGAAGAACATGAAAACCCATGTCACCTACCTAAATGTCACTAAAATGACAGATTTCAGAAAAGATGGTCATCCCTCCATATATAGGAAGCAAAACCTATCACCAGAAGAGAGAAAATCACCATTGAGGTACCAAGATTGCAGCCACTGGTGCCTCCCTGGTGTTCCTGATGCATGGAATGAGATTCTATATGCTGAGCTTCTGTTGAAAGAGTATCAGAATCAGCATCAACAGAAGCAAACATAG
Predicted protein sequences of Glyma09g16780
>Glyma09g16780.2   sequence type=predicted peptide   gene model=Glyma09g16780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADSTKYIPIGGTLKSNLKTLFPIFKTRKTLTFAYAFSFTFVAFTVFLAFCPSPNTSSPFFTNIFSSTATTTSSASSYKSQLSSIFSFFFHNSTTPSSNSSSSTFNTNTTRSSNSTSQSPQTSKKTFKITPFENQTRTTPPPLTRKIPSDHVVTKEPSSANNNHTRVSDEAKAVKKTNQSSNGVVPAAAPKVSGVGSNKNLSSLVNGGGTEKDVVHSNYTASRVKDEMMESLIKCDFFDGEWVKDDSYPLYEPGSCNIVDEQFHCIQNGRPDKDFQKYKWKPKGCNLPRLDGHIMLDMLRGKRLIFVGDSINRNMWESLICILRNAVKDKSKVYEANGRVHFRGEASYSFVFKDYNFSVELFVSPFLVQEWEVQIKNGTKKETLRLDLVGKSSVQYKNADIIIFNTGHWWTHDKTSKGKDYYQEGSHVYDELNVLEAFRRAITTWSRWIDANINPSKSMVFFRGYSASHFSGGQWNSGGQCDSETVPIKNEKYLREYPPKMRVLEKVLKNMKTHVTYLNVTKMTDFRKDGHPSIYRKQNLSPEERKSPLRYQDCSHWCLPGVPDAWNEILYAELLLKEYQNQHQQKQT*






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