SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma09g16579): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma09g16579): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma09g16579

Feature Type:gene_model
Chromosome:Gm09
Start:19875502
stop:19875897
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g16579
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G04240AT Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:1114187-1120722 REVERSE LENGTH=977 SoyBaseE_val: 1.00E-33ISS
GO:0006493GO-bp Annotation by Michelle Graham. GO Biological Process: protein O-linked glycosylation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0016757GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups SoyBaseN/AISS
PTHR23083Panther O-LINKED N-ACETYLGLUCOSAMINE TRANSFERASE, OGT JGI ISS
PTHR23083:SF21Panther UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMI JGI ISS
UniRef100_G7I5N5UniRef Annotation by Michelle Graham. Most informative UniRef hit: O-linked GlcNAc transferase like protein n=2 Tax=Medicago truncatula RepID=G7I5N5_MEDTR SoyBaseE_val: 3.00E-32ISS
UniRef100_I1NIK8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NIK8_SOYBN SoyBaseE_val: 7.00E-36ISS

Expression Patterns of Glyma09g16579
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g16579 not represented in the dataset
Glyma09g16579 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma09g16579 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g108700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g16579
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g16579
>Glyma09g16579.1   sequence type=CDS   gene model=Glyma09g16579   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCACAACAGGAAGAATGTTGAGGTGTTCTGCTATGCCTTGAGTGTTAATGATGGTACTGAATGGAGGCAACGTATTCAGTCTGAAGCAGAGCACTTTGTGGATGTATCTGCCATGTCATTGGATGCAATAGCAAAAATGATTAATGAGGATAAGATACATATCCTTGTCAACCTAAATGGTTATACAAAGGTAGGGGGTAATTCTTTTATGTTCTTTCTAGTATTTAAGCTTCACAATTAA
Predicted protein sequences of Glyma09g16579
>Glyma09g16579.1   sequence type=predicted peptide   gene model=Glyma09g16579   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHNRKNVEVFCYALSVNDGTEWRQRIQSEAEHFVDVSAMSLDAIAKMINEDKIHILVNLNGYTKVGGNSFMFFLVFKLHN*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo