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Report for Sequence Feature Glyma09g16090

Feature Type:gene_model
Chromosome:Gm09
Start:19201065
stop:19203101
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g16090
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G01720AT Annotation by Michelle Graham. TAIR10: RNI-like superfamily protein | chr5:267118-270391 REVERSE LENGTH=665 SoyBaseE_val: 5.00E-24ISS
GO:0006511GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0009407GO-bp Annotation by Michelle Graham. GO Biological Process: toxin catabolic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0004842GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity SoyBaseN/AISS
PTHR23125Panther F-BOX/LEUCINE RICH REPEAT PROTEIN JGI ISS
PTHR23125:SF56Panther F-BOX PROTEIN, ATFBL3 JGI ISS
PF04928PFAM Poly(A) polymerase central domain JGI ISS
UniRef100_D7M6G1UniRef Annotation by Michelle Graham. Most informative UniRef hit: F-box family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7M6G1_ARALL SoyBaseE_val: 9.00E-22ISS
UniRef100_UPI000233818AUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233818A related cluster n=1 Tax=unknown RepID=UPI000233818A SoyBaseE_val: 1.00E-90ISS

Expression Patterns of Glyma09g16090
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g16090 not represented in the dataset
Glyma09g16090 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma09g16090 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g107600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g16090
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g16090
>Glyma09g16090.1   sequence type=CDS   gene model=Glyma09g16090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCCATCGATCACGACTGGACCTATCATGGTGGTTCACGGGGATTGGGCTGCTAAGCCTCAACGCACGGTGCGAGCACTTGGTGGAGCTGAGCATCCTCGGCGTTGCTGCGATGGCGCATGCGCAGAACCTGCGGAAGTTGTGGCTAGCGAGGTGCAAGATGGTGACGAATATGGGGATTGGATGTATTGTGATGGGGTGCAAGAAGCTTAAGCTAATTTTCTTGAAGTGGTGTGTGGGAATTGGGGATTTGGTTGCAATTAAGTGTAAGGAGCTCACAACATTGGATCTCTCTTATTTTCCTCACTTTCTCACAACACTTTGTTGCTTGAAATTTTGGGCCAAAGGGCGAGGCATTTATTCTAATGTTTTCTTGGTGGTGTTAACTTGGCACTTCTTGTAG
Predicted protein sequences of Glyma09g16090
>Glyma09g16090.1   sequence type=predicted peptide   gene model=Glyma09g16090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTHRSRLDLSWWFTGIGLLSLNARCEHLVELSILGVAAMAHAQNLRKLWLARCKMVTNMGIGCIVMGCKKLKLIFLKWCVGIGDLVAIKCKELTTLDLSYFPHFLTTLCCLKFWAKGRGIYSNVFLVVLTWHFL*






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