SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G58580 | AT | Annotation by Michelle Graham. TAIR10: DNAse I-like superfamily protein | chr3:21660866-21663697 REVERSE LENGTH=603 | SoyBase | E_val: 0 | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| KOG0620 | KOG | Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 and related proteins | JGI | ISS | |
| PTHR12121 | Panther | CARBON CATABOLITE REPRESSOR PROTEIN 4 | JGI | ISS | |
| PTHR12121:SF20 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF03372 | PFAM | Endonuclease/Exonuclease/phosphatase family | JGI | ISS | |
| UniRef100_B9SYV1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Carbon catabolite repressor protein, putative n=1 Tax=Ricinus communis RepID=B9SYV1_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1L2J3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L2J3_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma09g15980 not represented in the dataset |
Glyma09g15980 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g26620 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g105600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g15980.2 sequence type=transcript gene model=Glyma09g15980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AGGTCCCTCCATCATTAACAAATACTCTTTCTCTCTCGAATAGAAAAAAGAAAGAACCCAACGAAGAAAGAAGAAAAAACAAAGGACCCAAACAAAGCCGAAAGAAAGAAAGAAAGCACGATTACTTGCACTTGTTCTTCCTCTGCAGTAAAACCCTAGCTAGCCATCATCGTAACGTAATCGATCCCTCTGACTCTCACTCTAGAACCTTCGACTCGATCCGAATCCCTAGATCGGATTGCAAGGCTGGCGGGTATTCTGGTCAAGTAAATGACGGATCTCCCCCGCCGCGGCTTCTTATTATCGTTGATAGGGTTACCGCGCTGTGACGATTGTTATTGTTTTTTCCAAGAAGAAGAAGAAGAAGAAGAAGAGTGTGAAGAAGCATGCTGAGCGTGGTGCGCGTGCACCTGCCCTCGGAAATTCCCATTGTAGGCTGCGAGCTCACGCCGTACGTCCTCCTCCGCCGCCCCGACAAGACCGTTTCCACCGACGATGTTCCCGAAACCGCTCCCTTAGACGGCCATTTCTTGCGCTACAAATGGTATCGTGTACAGAGTGATAAAAAAGTTGCTGTATGTAGCATACATCCATCAGAGCAAGCCACCCTGCAATGCCTAGGCTGTGTTAAGGCCAAAATACCTGTTTCCAAGAGTTACCATTGCACCACAAAGTGTTTTTCGGATGCATGGCAGCATCATCGTGTCTTACATGATCGTGCCGCAAGTGCTCTTAATGAAAATGGAAACGAGGAGGAGGAGGTATTTGGGCGCTTTAATAGTACTGGGTCTGGGGCAACCAATTCCAGTTTATCTGCCTCTGCATCAAGTGCTAGCTTGACAAATGGGTCTGCAACACCTTTGTATCCAGCAGCTATCACACAAAGAAGTGGTGAAACTTGGTTTGAAGTTGGAAGATCTAAGACTTACACCCCTACTGCTGATGACATTGGCCATGTCCTTAAGTTTGAGTGTGTTGCAGTTGATGCAGAGACAAAACTGCCTGTGGGGCATGTCAACACTATACTAACTTCACGTGTCATTCCAGCTCCCTCGCCTATTCCTCGCCGACTGATACCTGTTGATGGGATGGCGCATTTAGATGTGGATGGGAGAATGACATCTTCAGGAACTTTTACTGTCCTATCATACAATGTATTGTCTGAAGCATATGCCTCAAATGATCTATACAATTACTGCCCTTCATGGGCTCTTTCTTGGCCATATCGCAGGCAAAATTTGTTACGGGAAATTATTGGTTATCGCCCAGACATTATTTGTCTTCAGGAGGTTCAAAGCGATCATTATGACGAATTCTTTTCTCCTGAACTAGACAAACATGGATATCATGGTCTTTACAAGAGAAAAACAAATGAGGTGTACAGTGGCAACACAAATACAATTGATGGGTGTGCAACATTTTTCCGTAGAGACAGATTTTCACATGTTAAGAAATACGAGGTTGAATTTAACAAGGCTGCACAGTCTTTGACGGAGGCTACAATTCCAACCACTCAGAAGAAAACTGCCTTGAATCGGCTGGTTAAGGATAATGTTGCACTAATAGTGGTTCTAGAAGCAAAAGTTAACAATCAGCCATTTGATAATGCTGGGAAAAGACAGCTTCTTTGTGTGGCAAATACACATGTAAATGTCTCCCAAGATCTAAAGGATGTGAAACTCTGGCAGGTTCATACTCTCTTAAAAGGTTTGGAAAAAATAGCTGCAAGTGCAGACATTCCGATGTTGGTTTGTGGAGATTTTAATTCAGTTCCGGGAAGTGCTCCTCATGCACTTCTTGCAATGGGGAAGGTAGATCCTTCACATCCTGATTTAGCAGTTGACCCGCTTAACATTCTACGTCCTCACAGCAAGTTGGTTCATCAGTTACCACTGGTTAGTGCATACACATCTTTTGCAAGAACAGTTGGCCTTGGATATGAGCAGCATAAAAGGAGACTGGATGGTGGAACGAATGAACCTTTATTCACAAATGTCACTAGAGATTTTATTGGCACTCTAGATTACATATTTTACACAGCGGATTCATTGGTTGTGGAGTCATTATTGGAGTTGCTGGATGAGGAGAGTTTGAGGAAGGACACAGCACTTCCTTCACCTGAATGGTCCTCAGATCACATTGCTCTCTTAGCTGAGTTTCGCTGCTGCAAGAATAAATCTAGGCGTTGACAGTTAAGGTCACTTTCAGTGATACATAAAGAAAAAGTCTGAAAGAAGCATTTGGTTGGTAAGTTTTTTGTAAAAATGGTAGATCATGCCTGTCTTTTTCAGGTATCTCCATGTGGAGTCATTGCAATGATCTGCTATGTATCATGTCACCTTTATCTCAGAGAAAAAAAAATATGATTTTCTGCCTTAACGACTTGCCTGTCTGAGCCCCCTCCCCCGAAATCTCCAATTGTTTTCCTTTTAAAAGGGATTTTTTTTTCATAGATGCCTATTGGGGCTCCATATATCCCCTACTAAAGAACTAAAGTCTTTCTGATTTAGTTGCCGCCGCCGAGCCTAGGGCTAGAATTTCTCACATATCTGTACTGGTAGTCTTCGAAAATTAGATAATTGTTTTTATTTTGTTACACCCGTCAGAAACAAAATTGGTATGGCGTAATTGATAATGAAGTAGAAGAATTCCACCCAATACGAAGGTAAAGTTGCTTAACATGGGGGTGAGATCCGAACTGTTGCTATAATTGTAGCAACATAGAAGAGATGCTTACTAGTGATAGTAAAAAAGGGTATGACTAGTCAAATACTTGATTTTTCTGCTATCCCGTTTTAAATATGTTGGCAGCAAATGGGCATTTCAACTTTTTCTGATTAAAATACGATAAAAT
>Glyma09g15980.1 sequence type=CDS gene model=Glyma09g15980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTGAGCGTGGTGCGCGTGCACCTGCCCTCGGAAATTCCCATTGTAGGCTGCGAGCTCACGCCGTACGTCCTCCTCCGCCGCCCCGACAAGACCGTTTCCACCGACGATGTTCCCGAAACCGCTCCCTTAGACGGCCATTTCTTGCGCTACAAATGGTATCGTGTACAGAGTGATAAAAAAGTTGCTGTATGTAGCATACATCCATCAGAGCAAGCCACCCTGCAATGCCTAGGCTGTGTTAAGGCCAAAATACCTGTTTCCAAGAGTTACCATTGCACCACAAAGTGTTTTTCGGATGCATGGCAGCATCATCGTGTCTTACATGATCGTGCCGCAAGTGCTCTTAATGAAAATGGAAACGAGGAGGAGGAGGTATTTGGGCGCTTTAATAGTACTGGGTCTGGGGCAACCAATTCCAGTTTATCTGCCTCTGCATCAAGTGCTAGCTTGACAAATGGGTCTGCAACACCTTTGTATCCAGCAGCTATCACACAAAGAAGTGGTGAAACTTGGTTTGAAGTTGGAAGATCTAAGACTTACACCCCTACTGCTGATGACATTGGCCATGTCCTTAAGTTTGAGTGTGTTGCAGTTGATGCAGAGACAAAACTGCCTGTGGGGCATGTCAACACTATACTAACTTCACGTGTCATTCCAGCTCCCTCGCCTATTCCTCGCCGACTGATACCTGTTGATGGGATGGCGCATTTAGATGTGGATGGGAGAATGACATCTTCAGGAACTTTTACTGTCCTATCATACAATGTATTGTCTGAAGCATATGCCTCAAATGATCTATACAATTACTGCCCTTCATGGGCTCTTTCTTGGCCATATCGCAGGCAAAATTTGTTACGGGAAATTATTGGTTATCGCCCAGACATTATTTGTCTTCAGGAGGTTCAAAGCGATCATTATGACGAATTCTTTTCTCCTGAACTAGACAAACATGGATATCATGGTCTTTACAAGAGAAAAACAAATGAGGTGTACAGTGGCAACACAAATACAATTGATGGGTGTGCAACATTTTTCCGTAGAGACAGATTTTCACATGTTAAGAAATACGAGGTTGAATTTAACAAGGCTGCACAGTCTTTGACGGAGGCTACAATTCCAACCACTCAGAAGAAAACTGCCTTGAATCGGCTGGTTAAGGATAATGTTGCACTAATAGTGGTTCTAGAAGCAAAAGTTAACAATCAGCCATTTGATAATGCTGGGAAAAGACAGCTTCTTTGTGTGGCAAATACACATGTAAATGTCTCCCAAGATCTAAAGGATGTGAAACTCTGGCAGGTTCATACTCTCTTAAAAGGTTTGGAAAAAATAGCTGCAAGTGCAGACATTCCGATGTTGGTTTGTGGAGATTTTAATTCAGTTCCGGGAAGTGCTCCTCATGCACTTCTTGCAATGGGGAAGGTAGATCCTTCACATCCTGATTTAGCAGTTGACCCGCTTAACATTCTACGTCCTCACAGCAAGTTGGTTCATCAGTTACCACTGGTTAGTGCATACACATCTTTTGCAAGAACAGTTGGCCTTGGATATGAGCAGCATAAAAGGAGACTGGATGGTGGAACGAATGAACCTTTATTCACAAATGTCACTAGAGATTTTATTGGCACTCTAGATTACATATTTTACACAGCGGATTCATTGGTTGTGGAGTCATTATTGGAGTTGCTGGATGAGGAGAGTTTGAGGAAGGACACAGCACTTCCTTCACCTGAATGGTCCTCAGATCACATTGCTCTCTTAGCTGAGTTTCGCTGCTGCAAGAATAAATCTAGGCGTTGA >Glyma09g15980.2 sequence type=CDS gene model=Glyma09g15980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTGAGCGTGGTGCGCGTGCACCTGCCCTCGGAAATTCCCATTGTAGGCTGCGAGCTCACGCCGTACGTCCTCCTCCGCCGCCCCGACAAGACCGTTTCCACCGACGATGTTCCCGAAACCGCTCCCTTAGACGGCCATTTCTTGCGCTACAAATGGTATCGTGTACAGAGTGATAAAAAAGTTGCTGTATGTAGCATACATCCATCAGAGCAAGCCACCCTGCAATGCCTAGGCTGTGTTAAGGCCAAAATACCTGTTTCCAAGAGTTACCATTGCACCACAAAGTGTTTTTCGGATGCATGGCAGCATCATCGTGTCTTACATGATCGTGCCGCAAGTGCTCTTAATGAAAATGGAAACGAGGAGGAGGAGGTATTTGGGCGCTTTAATAGTACTGGGTCTGGGGCAACCAATTCCAGTTTATCTGCCTCTGCATCAAGTGCTAGCTTGACAAATGGGTCTGCAACACCTTTGTATCCAGCAGCTATCACACAAAGAAGTGGTGAAACTTGGTTTGAAGTTGGAAGATCTAAGACTTACACCCCTACTGCTGATGACATTGGCCATGTCCTTAAGTTTGAGTGTGTTGCAGTTGATGCAGAGACAAAACTGCCTGTGGGGCATGTCAACACTATACTAACTTCACGTGTCATTCCAGCTCCCTCGCCTATTCCTCGCCGACTGATACCTGTTGATGGGATGGCGCATTTAGATGTGGATGGGAGAATGACATCTTCAGGAACTTTTACTGTCCTATCATACAATGTATTGTCTGAAGCATATGCCTCAAATGATCTATACAATTACTGCCCTTCATGGGCTCTTTCTTGGCCATATCGCAGGCAAAATTTGTTACGGGAAATTATTGGTTATCGCCCAGACATTATTTGTCTTCAGGAGGTTCAAAGCGATCATTATGACGAATTCTTTTCTCCTGAACTAGACAAACATGGATATCATGGTCTTTACAAGAGAAAAACAAATGAGGTGTACAGTGGCAACACAAATACAATTGATGGGTGTGCAACATTTTTCCGTAGAGACAGATTTTCACATGTTAAGAAATACGAGGTTGAATTTAACAAGGCTGCACAGTCTTTGACGGAGGCTACAATTCCAACCACTCAGAAGAAAACTGCCTTGAATCGGCTGGTTAAGGATAATGTTGCACTAATAGTGGTTCTAGAAGCAAAAGTTAACAATCAGCCATTTGATAATGCTGGGAAAAGACAGCTTCTTTGTGTGGCAAATACACATGTAAATGTCTCCCAAGATCTAAAGGATGTGAAACTCTGGCAGGTTCATACTCTCTTAAAAGGTTTGGAAAAAATAGCTGCAAGTGCAGACATTCCGATGTTGGTTTGTGGAGATTTTAATTCAGTTCCGGGAAGTGCTCCTCATGCACTTCTTGCAATGGGGAAGGTAGATCCTTCACATCCTGATTTAGCAGTTGACCCGCTTAACATTCTACGTCCTCACAGCAAGTTGGTTCATCAGTTACCACTGGTTAGTGCATACACATCTTTTGCAAGAACAGTTGGCCTTGGATATGAGCAGCATAAAAGGAGACTGGATGGTGGAACGAATGAACCTTTATTCACAAATGTCACTAGAGATTTTATTGGCACTCTAGATTACATATTTTACACAGCGGATTCATTGGTTGTGGAGTCATTATTGGAGTTGCTGGATGAGGAGAGTTTGAGGAAGGACACAGCACTTCCTTCACCTGAATGGTCCTCAGATCACATTGCTCTCTTAGCTGAGTTTCGCTGCTGCAAGAATAAATCTAGGCGTTGA
>Glyma09g15980.1 sequence type=predicted peptide gene model=Glyma09g15980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLSVVRVHLPSEIPIVGCELTPYVLLRRPDKTVSTDDVPETAPLDGHFLRYKWYRVQSDKKVAVCSIHPSEQATLQCLGCVKAKIPVSKSYHCTTKCFSDAWQHHRVLHDRAASALNENGNEEEEVFGRFNSTGSGATNSSLSASASSASLTNGSATPLYPAAITQRSGETWFEVGRSKTYTPTADDIGHVLKFECVAVDAETKLPVGHVNTILTSRVIPAPSPIPRRLIPVDGMAHLDVDGRMTSSGTFTVLSYNVLSEAYASNDLYNYCPSWALSWPYRRQNLLREIIGYRPDIICLQEVQSDHYDEFFSPELDKHGYHGLYKRKTNEVYSGNTNTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTEATIPTTQKKTALNRLVKDNVALIVVLEAKVNNQPFDNAGKRQLLCVANTHVNVSQDLKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVDPSHPDLAVDPLNILRPHSKLVHQLPLVSAYTSFARTVGLGYEQHKRRLDGGTNEPLFTNVTRDFIGTLDYIFYTADSLVVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRCCKNKSRR* >Glyma09g15980.2 sequence type=predicted peptide gene model=Glyma09g15980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLSVVRVHLPSEIPIVGCELTPYVLLRRPDKTVSTDDVPETAPLDGHFLRYKWYRVQSDKKVAVCSIHPSEQATLQCLGCVKAKIPVSKSYHCTTKCFSDAWQHHRVLHDRAASALNENGNEEEEVFGRFNSTGSGATNSSLSASASSASLTNGSATPLYPAAITQRSGETWFEVGRSKTYTPTADDIGHVLKFECVAVDAETKLPVGHVNTILTSRVIPAPSPIPRRLIPVDGMAHLDVDGRMTSSGTFTVLSYNVLSEAYASNDLYNYCPSWALSWPYRRQNLLREIIGYRPDIICLQEVQSDHYDEFFSPELDKHGYHGLYKRKTNEVYSGNTNTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTEATIPTTQKKTALNRLVKDNVALIVVLEAKVNNQPFDNAGKRQLLCVANTHVNVSQDLKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVDPSHPDLAVDPLNILRPHSKLVHQLPLVSAYTSFARTVGLGYEQHKRRLDGGTNEPLFTNVTRDFIGTLDYIFYTADSLVVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRCCKNKSRR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
