SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma09g15946

Feature Type:gene_model
Chromosome:Gm09
Start:18927485
stop:18944433
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g15946
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G42520AT Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:17705382-17708744 FORWARD LENGTH=633 SoyBaseE_val: 0ISS
GO:0005777GO-cc Annotation by Michelle Graham. GO Cellular Compartment: peroxisome SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0004386GO-mf Annotation by Michelle Graham. GO Molecular Function: helicase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0008026GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity SoyBaseN/AISS
KOG0335 KOG ATP-dependent RNA helicase JGI ISS
PTHR24031Panther FAMILY NOT NAMED JGI ISS
PTHR24031:SF56Panther SUBFAMILY NOT NAMED JGI ISS
PF00270PFAM DEAD/DEAH box helicase JGI ISS
PF00271PFAM Helicase conserved C-terminal domain JGI ISS
UniRef100_Q84W89UniRef Annotation by Michelle Graham. Most informative UniRef hit: DEAD-box ATP-dependent RNA helicase 37 n=1 Tax=Arabidopsis thaliana RepID=RH37_ARATH SoyBaseE_val: 0ISS
UniRef100_UPI0002338187UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002338187 related cluster n=1 Tax=unknown RepID=UPI0002338187 SoyBaseE_val: 0ISS

Expression Patterns of Glyma09g15946
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g15946 not represented in the dataset
Glyma09g15946 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g15946
ParalogEvidenceComments
Glyma02g26630 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g15946 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g105300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g15946
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g15946
>Glyma09g15946.1   sequence type=CDS   gene model=Glyma09g15946   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAACTTCATGGGCGGATTCTGCTGACAACTCAACCATTGGTTCTGGCAATAGCAATTCCTCGGCTTGCCCTCCCCGGGGAGCTTATGTGCCGCCGCATCTTCGGAACCGGGTATTCTCGTCCGAGGTTCCTCCGGCAGCGTCACACCCAGTGGCTCCGGGGAATGACCGGGTGAATCATGGTGGTCCAGCTCCTCATCAGGGTAGTGGTTACTTTAAAGCCGATCATGGGCGGCAGCCGCAGCAAGGATTTGGATATGGTTCTGGTTTTCAGAGTGGTGGTGGTGGTGGCTGGAATGGTAGAGGGGCGGGAAGGGACCGTGGGAGGCGCGAGGCGAACCCTTTTGAGAATGTTGAGGCTGAGGATCAATCTTTTAGTGAGCTAGAGAACACAGGGATTAACTTTGATGCATATGATGATATCCCTGTGGAGACAAGCGGGGAGAATGTGCCACCGCCTGTGAATACATTCGCGGAAATAGATTTGGGTGAGGCGTTGAATCAGAATATACAGAGGTGCAAGTATGTGAAACCAACCCCGGTTCAAAGGTATGCCATTCCAATTTCTCTTGCGGGGCGAGACTTGATGGCCTGTGCTCAGACTGGGTCAGGAAAGACAGCTGCATTTTGCTTCCCTATTATAAGTGGAATCATGAGGGAGCAATATGCTCAAAGGCCACGTGTGGCTCGAACTGCTTATCCGCTGGCACTTATCCTCTCCCCTACAAGGGAGCTTTCATGTCAGATACATGATGAGGCCAAAAAGTTTTCTTATCAAACTGGTGTCAAAGTTGTGGTTGCTTATGGAGGAGCACCAATCAACCAACAGTTACGGGAGCTTGAGAGAGGCGTTGATATTCTGGTGGCAACTCCAGGACGATTGGTGGATTTGCTTGAGAGGGCTAGGGTGTCATTGCAGATGATAAGATACTTGGCTCTTGATGAGGCAGATCGGATGCTAGATATGGGTTTTGAGCCTCAAATAAGAAAGATAGTTGAACAAATGGACATGCCTCCTCCAGGCATGAGACAGACGCTGTTGTTTAGTGCCACATTTCCCAAAGAGATACAGGCTCTTGCCTCGGATTTTCTTTCAAATTATGTGTTTCTGGCTGTTGGAAGGGTCGGTTCTAGTACTGATCTAATTGCTCAAAGAGTAGAATACGTGCTCGAGTCAGACAAGAGAAGCCACCTCATGGACCTTCTTCACGCTCAGAGGGAAACTGGAGTTAATGGCAAGCAAGGTTTGACATTAGTTTTTGTGGAAACGAAGAAAGGAGCTGATGCATTGGAACACTGCTTGTGTGTTAATGGGTTTCCTGCAGCTAGCATTCATGGTGACAGAACACAACAAGAAAGAGAACTAGCATTGAGGTCGTTCAAGACTGGAAACACACCAATTCTAGTGGCAACAGATGTTGCAGCGCGTGGTCTTGACATCCCACGGGTAGCACATGTGGTAAATTTTGATCTTCCAAATGACATTGACGATTATGTGCACCGGATAGGAAGAACGGGACGAGCTGGTAAAATGGGATTAGCAACGGCCTTCTTCAACGAAGGTAATTTGAACTTGGCTAAATCATTGGCTGATTTGATGCAAGAGGCAAATCAAGAAGTACCTGCCTGGCTCAGCCGATATGCAGCAAGGGCTATTTACAGTGGTGGCAACAGAAATAGGAAGTCTGGGGGATCTCGTTTTGGTGGCCGCGATTTTAGGAAAGAGGGTTCGTTTAATAAAGCAACGGATTACTATGGCAGTGGAACTGGTGGTGGATATGGTGGCAATTATGGTGGAGGGTATGGTCAAGGTGTGACAAGTGCTTGGGATTAG
Predicted protein sequences of Glyma09g15946
>Glyma09g15946.1   sequence type=predicted peptide   gene model=Glyma09g15946   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRTSWADSADNSTIGSGNSNSSACPPRGAYVPPHLRNRVFSSEVPPAASHPVAPGNDRVNHGGPAPHQGSGYFKADHGRQPQQGFGYGSGFQSGGGGGWNGRGAGRDRGRREANPFENVEAEDQSFSELENTGINFDAYDDIPVETSGENVPPPVNTFAEIDLGEALNQNIQRCKYVKPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMREQYAQRPRVARTAYPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGMRQTLLFSATFPKEIQALASDFLSNYVFLAVGRVGSSTDLIAQRVEYVLESDKRSHLMDLLHAQRETGVNGKQGLTLVFVETKKGADALEHCLCVNGFPAASIHGDRTQQERELALRSFKTGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNEGNLNLAKSLADLMQEANQEVPAWLSRYAARAIYSGGNRNRKSGGSRFGGRDFRKEGSFNKATDYYGSGTGGGYGGNYGGGYGQGVTSAWD*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo