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Report for Sequence Feature Glyma09g15820

Feature Type:gene_model
Chromosome:Gm09
Start:18809267
stop:18812715
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g15820
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G55310AT Annotation by Michelle Graham. TAIR10: SC35-like splicing factor 33 | chr1:20630676-20632567 FORWARD LENGTH=220 SoyBaseE_val: 4.00E-63ISS
GO:0000398GO-bp Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0006396GO-bp Annotation by Michelle Graham. GO Biological Process: RNA processing SoyBaseN/AISS
GO:0008380GO-bp Annotation by Michelle Graham. GO Biological Process: RNA splicing SoyBaseN/AISS
GO:0022402GO-bp Annotation by Michelle Graham. GO Biological Process: cell cycle process SoyBaseN/AISS
GO:0030422GO-bp Annotation by Michelle Graham. GO Biological Process: production of siRNA involved in RNA interference SoyBaseN/AISS
GO:0035196GO-bp Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA SoyBaseN/AISS
GO:0043687GO-bp Annotation by Michelle Graham. GO Biological Process: post-translational protein modification SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005730GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleolus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016607GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nuclear speck SoyBaseN/AISS
GO:0035061GO-cc Annotation by Michelle Graham. GO Cellular Compartment: interchromatin granule SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0042802GO-mf Annotation by Michelle Graham. GO Molecular Function: identical protein binding SoyBaseN/AISS
KOG0131 KOG Splicing factor 3b, subunit 4 JGI ISS
PTHR23147Panther SERINE/ARGININE RICH SPLICING FACTOR JGI ISS
PF00076PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) JGI ISS
UniRef100_B9T013UniRef Annotation by Michelle Graham. Most informative UniRef hit: Serine/arginine rich splicing factor, putative n=1 Tax=Ricinus communis RepID=B9T013_RICCO SoyBaseE_val: 5.00E-74ISS
UniRef100_C6TK79UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TK79_SOYBN SoyBaseE_val: 2.00E-137ISS

Expression Patterns of Glyma09g15820
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g15820 not represented in the dataset
Glyma09g15820 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma09g15820 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g104200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g15820
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma09g15820
>Glyma09g15820.4   sequence type=transcript   gene model=Glyma09g15820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAACAACAAAACAAAGTCCCCCCCCTCTCTCTCTCGGTGTCTGGAACAGAGATTGCGTTTGTTTCGCGAATTGTGAAGCCGCTGATAGGTGAAATAGCACCAAATATGAGGGGAAGAAGCTGCAGTTACAGCCCATCACCTTCACCTCCAAGGCGTTACAGCCGAAGAAGGCACAGCCTTAGCCCTAGGGGCCGATATAGAGGATGTGATAGGGATTTGCCAACAAGTCTTCTGGTTCGAAACCTCAACAGAGATTGCAGGCCAGAAGATCTGCATGGTCCATTTGGCCAATTTGGTCCTCTTAAGGATGTTTACCTGCCTCGAGATTATTATACTGGGGAGCCAAGAGGTTTTGGGTTTGTCCAATATGTGGACCCAGCTGATGCTGCAGATGCAAAATATCACATGGACGGTCGAATTCTTCTTGGTCGTGAGATAACTGTAGTGTTTGCTGAAGAAAACAGAAAGAAACCTGCTGAAATGAGAGCAAGAGAACACAGGAGGGATCGATCGCATGATTACAGGCGATCTTCACGAACCTATTCTCCTAGTCCAGACTATTCTCCTTCTCCAAGACGAAGGCGACATTACAGGTCAATCTCACCAAGGGACAGAAAGTATAGGGATCGATCATACTCTAGATCATCTTATGCATCAAGAAGCCGCAGCAGAAGTAGGAGTTACAATAGGAGTTTGAGCCGAAGTCCGGGCTACTCTAGGTGATTAACTTGATAAGCATGGTGGTGGGTGCGGTGGACAATGCTTTAGTTTGCATATGTATTTTTTATGGAGCTTGTGTGTTGAAATACTTCAGAATGTTGGTATTTTGTTCATCTAGTAGAGAGGATTTGGCGTGGTTTTGTTTCAGCTTTATTACTAGACAACATTTGTACTTGATATTTAATTCTAGTTTTATTGAACTGGTTGTGTTAGATTAAGATTTTGATTTGTGCCATTCTGGCTACATATTCTTGTCATTGGGTTATGGATTTTCATTATGTATAGTTTTTCTTCTACGATGCCCATTGCCTAGTCGTCTTAGTTAACATTGTTAATGTTTATTTTTAGTGTATTAGTATGAGAAACAGGCAATACTACTACTCTACTGGTTTGAATTTTTTTT

>Glyma09g15820.5   sequence type=transcript   gene model=Glyma09g15820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAGAAAAGAAAGAAGTAATAAGAGTTCTGTTCAAGGTGATGTTAGTGTCCTTGAAGGTTTGGAAGGTTGAGTTTGAATTCATTGTGAAGAAGTTGAAGTCTTGAAGAGTTCAATCTCAATTAATACTTTGGCTTCTACGAGGGAGCCAAGAGGTTTTGGGTTTGTCCAATATGTGGACCCAGCTGATGCTGCAGATGCAAAATATCACATGGACGGTCGAATTCTTCTTGGTCGTGAGATAACTGTAGTGTTTGCTGAAGAAAACAGAAAGAAACCTGCTGAAATGAGAGCAAGAGAACACAGGAGGGATCGATCGCATGATTACAGGCGATCTTCACGAACCTATTCTCCTAGTCCAGACTATTCTCCTTCTCCAAGACGAAGGCGACATTACAGGTCAATCTCACCAAGGGACAGAAAGTATAGGGATCGATCATACTCTAGATCATCTTATGCATCAAGAAGCCGCAGCAGAAGTAGGAGTTACAATAGGAGTTTGAGCCGAAGTCCGGGCTACTCTAGGTGATTAACTTGATAAGCATGGTGGTGGGTGCGGTGGACAATGCTTTAGTTTGCATATGTATTTTTTATGGAGCTTGTGTGTTGAAATACTTCAGAATGTTGGTATTTTGTTCATCTAGTAGAGAGGATTTGGCGTGGTTTTGTTTCAGCTTTATTACTAGACAACATTTGTACTTGATATTTAATTCTAGTTTTATTGAACTGGTTGTGTTAGATTAAGATTTTGATTTGTGCCATTCTGGCTACATATTCTTGTCATTGGGTTATGGATTTTCATTATGTATAGTTTTTCTTCTACGATGCCCATTGCCTAGTCGTCTTAGTTAACATTGTTAATGTTTATTTTTAGTGTATTAGTATGAGAAACAGGCAATACTACTACTCTACTGGTTTGAATTTTTTTT
Coding sequences of Glyma09g15820
>Glyma09g15820.3   sequence type=CDS   gene model=Glyma09g15820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGGGAAGAAGCTGCAGTTACAGCCCATCACCTTCACCTCCAAGGCGTTACAGCCGAAGAAGGCACAGCCTTAGCCCTAGGGGCCGATATAGAGGATGTGATAGGGATTTGCCAACAAGTCTTCTGGTTCGAAACCTCAACAGAGATTGCAGGCCAGAAGATCTGCATGGTCCATTTGGCCAATTTGGTCCTCTTAAGGATGTTTACCTGCCTCGAGATTATTATACTGGGGAGCCAAGAGGTTTTGGGTTTGTCCAATATGTGGACCCAGCTGATGCTGCAGATGCAAAATATCACATGGACGGTCGAATTCTTCTTGGTCGTGAGATAACTGTAGTGTTTGCTGAAGAAAACAGAAAGAAACCTGCTGAAATGAGAGCAAGAGAACACAGGAGGGATCGATCGCATGATTACAGGCGATCTTCACGAACCTATTCTCCTAGTCCAGACTATTCTCCTTCTCCAAGACGAAGGCGACATTACAGGTCAATCTCACCAAGGGACAGAAAGTATAGGGATCGATCATACTCTAGATCATCTTATGCATCAAGAAGCCGCAGCAGAAGTAGGAGTTACAATAGGAGTTTGAGCCGAAGTCCGGGCTACTCTAGGTGA

>Glyma09g15820.4   sequence type=CDS   gene model=Glyma09g15820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGGGAAGAAGCTGCAGTTACAGCCCATCACCTTCACCTCCAAGGCGTTACAGCCGAAGAAGGCACAGCCTTAGCCCTAGGGGCCGATATAGAGGATGTGATAGGGATTTGCCAACAAGTCTTCTGGTTCGAAACCTCAACAGAGATTGCAGGCCAGAAGATCTGCATGGTCCATTTGGCCAATTTGGTCCTCTTAAGGATGTTTACCTGCCTCGAGATTATTATACTGGGGAGCCAAGAGGTTTTGGGTTTGTCCAATATGTGGACCCAGCTGATGCTGCAGATGCAAAATATCACATGGACGGTCGAATTCTTCTTGGTCGTGAGATAACTGTAGTGTTTGCTGAAGAAAACAGAAAGAAACCTGCTGAAATGAGAGCAAGAGAACACAGGAGGGATCGATCGCATGATTACAGGCGATCTTCACGAACCTATTCTCCTAGTCCAGACTATTCTCCTTCTCCAAGACGAAGGCGACATTACAGGTCAATCTCACCAAGGGACAGAAAGTATAGGGATCGATCATACTCTAGATCATCTTATGCATCAAGAAGCCGCAGCAGAAGTAGGAGTTACAATAGGAGTTTGAGCCGAAGTCCGGGCTACTCTAGGTGA

>Glyma09g15820.5   sequence type=CDS   gene model=Glyma09g15820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGGTCGAATTCTTCTTGGTCGTGAGATAACTGTAGTGTTTGCTGAAGAAAACAGAAAGAAACCTGCTGAAATGAGAGCAAGAGAACACAGGAGGGATCGATCGCATGATTACAGGCGATCTTCACGAACCTATTCTCCTAGTCCAGACTATTCTCCTTCTCCAAGACGAAGGCGACATTACAGGTCAATCTCACCAAGGGACAGAAAGTATAGGGATCGATCATACTCTAGATCATCTTATGCATCAAGAAGCCGCAGCAGAAGTAGGAGTTACAATAGGAGTTTGAGCCGAAGTCCGGGCTACTCTAGGTGA
Predicted protein sequences of Glyma09g15820
>Glyma09g15820.3   sequence type=predicted peptide   gene model=Glyma09g15820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRGRSCSYSPSPSPPRRYSRRRHSLSPRGRYRGCDRDLPTSLLVRNLNRDCRPEDLHGPFGQFGPLKDVYLPRDYYTGEPRGFGFVQYVDPADAADAKYHMDGRILLGREITVVFAEENRKKPAEMRAREHRRDRSHDYRRSSRTYSPSPDYSPSPRRRRHYRSISPRDRKYRDRSYSRSSYASRSRSRSRSYNRSLSRSPGYSR*

>Glyma09g15820.4   sequence type=predicted peptide   gene model=Glyma09g15820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRGRSCSYSPSPSPPRRYSRRRHSLSPRGRYRGCDRDLPTSLLVRNLNRDCRPEDLHGPFGQFGPLKDVYLPRDYYTGEPRGFGFVQYVDPADAADAKYHMDGRILLGREITVVFAEENRKKPAEMRAREHRRDRSHDYRRSSRTYSPSPDYSPSPRRRRHYRSISPRDRKYRDRSYSRSSYASRSRSRSRSYNRSLSRSPGYSR*

>Glyma09g15820.5   sequence type=predicted peptide   gene model=Glyma09g15820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDGRILLGREITVVFAEENRKKPAEMRAREHRRDRSHDYRRSSRTYSPSPDYSPSPRRRRHYRSISPRDRKYRDRSYSRSSYASRSRSRSRSYNRSLSRSPGYSR*






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