Report for Sequence Feature Glyma09g15720
Feature Type: gene_model
Chromosome: Gm09
Start: 18579763
stop: 18585148
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma09g15720
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G11945 AT
Annotation by Michelle Graham. TAIR10: homogentisate prenyltransferase | chr3:3780041-3782880 REVERSE LENGTH=386
SoyBase E_val: 5.00E-165 ISS
PTHR11048 Panther
PRENYLTRANSFERASES
JGI ISS
PTHR11048:SF1 Panther
4-HYDROXYBENZOATE OCTAPRENYLTRANSFERASE
JGI ISS
PF01040 PFAM
UbiA prenyltransferase family
JGI ISS
UniRef100_Q1ACB2 UniRef
Annotation by Michelle Graham. Best UniRef hit: Homogentisate phytyltransferase VTE2-2 n=1 Tax=Glycine max RepID=Q1ACB2_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q1ACB2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Homogentisate phytyltransferase VTE2-2 n=1 Tax=Glycine max RepID=Q1ACB2_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma09g15720
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma09g15720
Paralog Evidence Comments
Glyma02g26820 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma09g15720 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.09g103500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma09g15720
Coding sequences of Glyma09g15720
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma09g15720.1 sequence type=CDS gene model=Glyma09g15720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGCTCTCACTCTCTCCAACTTCACATCGTGTTCCTTCCACAATTCCCACTTTGAATTTCGCTAAACTATCATCCACTAAGGCCACAACGTCCCAACCTTTGTTCTTAGGATTTTCCAAACACTTCAACTCAATTGGGTTGAACCATCACAGTTACAGATGCTGCTCAAATGCTGTTCCTAAGAGACCCCAAAGACCCAGTTCCATAAGGGCCTGCACTGGAGTTGGAGCTGCTGGTTCTGATCGTCCATTAGCTGAAAGACTTTTAGATTTGAAAGATGCTTGCTGGAGATTTTTAAGGCCACATACTATACGTGGTACAGCACTAGGTTCATTTGCTTTGGTGGCAAGAGCATTGATTGAGAACACGAATTTGATAAAGTGGTCTCTTTTGTTCAAAGCTTTCTCTGGTCTTTTTGCCCTGATTTGTGGGAATGGTTATATAGTTGGCATCAATCAAATCTATGACATTAGCATTGACAAGGTAAACAAACCTTATTTACCTATAGCTGCTGGAGATCTTTCTGTCCAATCTGCATGGTTCTTGGTTATATTTTTTGCAGCAGCTGGCCTGTCGATTGCAGGGTTGAACTTTGGGCCTTTCATTTTTTCTCTTTACACACTTGGCCTTTTCTTGGGAACCATCTATTCTGTTCCTCCATTGAGGATGAAACGCTTTCCTGTTGCAGCATTTCTTATAATTGCCACGGTACGTGGTTTTCTCCTTAACTTTGGTGTGTACTATGCCACTAGAGCTTCCCTTGGGCTTGCATTTGAATGGAGCTCTCCTGTGGTTTTTATCACAACATTTGTAACATTTTTCGCACTGGTAATTGCTATAACAAAAGATCTTCCTGATGTTGAAGGTGATCGCAAGTATCAGATATCAACCTTTGCTACAAAATTAGGAGTTCGGAACATTGCTTTCCTTGGTTCTGGAATTTTGCTGGTGAATTATATTGTTTCTGTTTTGGCAGCAATTTATATGCCTCAGGATGCAATATCAGGATTCTATCGATTCATATGGAATCTGTTCTATGCTGAGTATGCAATATTTCCTTTCATATAG
Predicted protein sequences of Glyma09g15720
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma09g15720.1 sequence type=predicted peptide gene model=Glyma09g15720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MELSLSPTSHRVPSTIPTLNFAKLSSTKATTSQPLFLGFSKHFNSIGLNHHSYRCCSNAVPKRPQRPSSIRACTGVGAAGSDRPLAERLLDLKDACWRFLRPHTIRGTALGSFALVARALIENTNLIKWSLLFKAFSGLFALICGNGYIVGINQIYDISIDKVNKPYLPIAAGDLSVQSAWFLVIFFAAAGLSIAGLNFGPFIFSLYTLGLFLGTIYSVPPLRMKRFPVAAFLIIATVRGFLLNFGVYYATRASLGLAFEWSSPVVFITTFVTFFALVIAITKDLPDVEGDRKYQISTFATKLGVRNIAFLGSGILLVNYIVSVLAAIYMPQDAISGFYRFIWNLFYAEYAIFPFI*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
