SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G54840 | AT | Annotation by Michelle Graham. TAIR10: Ras-related small GTP-binding family protein | chr5:22276611-22278328 REVERSE LENGTH=288 | SoyBase | E_val: 2.00E-103 | ISS |
| GO:0007264 | GO-bp | Annotation by Michelle Graham. GO Biological Process: small GTPase mediated signal transduction | SoyBase | N/A | ISS |
| GO:0016192 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005525 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTP binding | SoyBase | N/A | ISS |
| KOG1673 | KOG | Ras GTPases | JGI | ISS | |
| PTHR24073 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24073:SF279 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF08477 | PFAM | Miro-like protein | JGI | ISS | |
| UniRef100_D7MUW9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: GTP-binding family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MUW9_ARALL | SoyBase | E_val: 8.00E-109 | ISS |
| UniRef100_I1L2F8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L2F8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma09g15380 not represented in the dataset |
Glyma09g15380 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g102100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g15380.2 sequence type=transcript gene model=Glyma09g15380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTAAACATATAGTATTGAATGCACAAGAATATATGCCTGCGTGATGGGACCAAACTAAGTAAAGGCACACGCAGCACAACTCAAAGCAATGGAGAGAGTTATTATGAATGAACATTGAGAAAAAAGGCAGAGGCAGAAACAGAGAAGCAGAAGAAAACCACACTTTTTTCATGGCCAAAATCATTGGCAGGAGCAGAAGAAGAAGAATAACAACGACTACTACTCAACAACTATGCAACAGAATGGTTCATCATCATGTCAATGTCCGCTGCAACCTGTTCCATAGCATGTCCTTTCTTGGTCGTTTTATTTGGGACAGGATCCTTCTCTGCTCTCTTGGAAGGCCTTCTTACCTCAGGCTGCCCCTCCGTGACCCTCCACCGCCGGCCACCGTCAACGGTGGAGGCGGCTCCTTGCATGGACACCCCTTCACCACCACTACCACCACCATCCCTTGTGACTCTGACTCTGATTTGGTCAACCTCAAGATCAGCTTGCTTGGTGATTGCCATATTGGAAAGACTAGTTTTGTGATCAAGTATGTAGGGGATGAGCAAGAAAAGAGGAGCTTGCAGATGAAGGGACTTAATTTGATGGACAAAACTTTATTTGTTCAAGGAGCTAGGATTTCGTTTAGTATATGGGATGTTGCAGGTGACCCAGGTTCTATTTGTCAAATTCCAATGGCTTGTAAAGATTCAGTTGCAATTTTGATTATGTTTGATCTCACCAGTCGGTGTACACTGAATAGTGTTGTTGGATGGTACAGTAAAGCAAGAAAGTGGAATCAGACTGCAATTCCCATTCTAATAGGAACCAAATTTGATGATTTTGTTAAACTCCCCCCAGATGTGCAATGGACAATTGTAACACAGGAAAAATAAAGTTGTCGACAATTAACATCAAATTGTCGCGACCGGATCAACATTCATATGGTGGTTGTTGTTGATGAAGGAGAAGACTGGCGTGTAAGTATTAACAAACTCCTATATTAGTAATAAACAATATGCTAATATTTTATTGGCAAGATCTTTAATTTTGTATTAGAGACAAATAACTAATAAGATATATATTGTAGTTTATAATAATTTTTGTGTATTTTTGTTCTACG
>Glyma09g15380.1 sequence type=CDS gene model=Glyma09g15380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACATTGAGAAAAAAGGCAGAGGCAGAAACAGAGAAGCAGAAGAAAACCACACTTTTTTCATGGCCAAAATCATTGGCAGGAGCAGAAGAAGAAGAATAACAACGACTACTACTCAACAACTATGCAACAGAATGGTTCATCATCATGTCAATGTCCGCTGCAACCTGTTCCATAGCATGTCCTTTCTTGGTCGTTTTATTTGGGACAGGATCCTTCTCTGCTCTCTTGGAAGGCCTTCTTACCTCAGGCTGCCCCTCCGTGACCCTCCACCGCCGGCCACCGTCAACGGTGGAGGCGGCTCCTTGCATGGACACCCCTTCACCACCACTACCACCACCATCCCTTGTGACTCTGACTCTGATTTGGTCAACCTCAAGATCAGCTTGCTTGGTGATTGCCATATTGGAAAGACTAGTTTTGTGATCAAGTATGTAGGGGATGAGCAAGAAAAGAGGAGCTTGCAGATGAAGGGACTTAATTTGATGGACAAAACTTTATTTGTTCAAGGAGCTAGGATTTCGTTTAGTATATGGGATGTTGCAGGTGACCCAGGTTCTATTTGTCAAATTCCAATGGCTTGTAAAGATTCAGTTGCAATTTTGATTATGTTTGATCTCACCAGTCGGTGTACACTGAATAGTGTTGTTGGATGGTACAGTAAAGCAAGAAAGTGGAATCAGACTGCAATTCCCATTCTAATAGGAACCAAATTTGATGATTTTGTTAAACTCCCCCCAGATGTGCAATGGACAATTGTAACACAGGCAAGGGCTTATGCAAGGGCAATGAAAGCTACTCTTTTCTTCTCAAGTGCAAGCCACAACATAAATGTCAACAAAATCTTCAAGTTTATCATGGCCAAGCTCTTCAACTTGCCATGGAAAGTGGAACGAAATCTGACACTAGGAGAACCCACAATTGACTTTTGA >Glyma09g15380.2 sequence type=CDS gene model=Glyma09g15380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACATTGAGAAAAAAGGCAGAGGCAGAAACAGAGAAGCAGAAGAAAACCACACTTTTTTCATGGCCAAAATCATTGGCAGGAGCAGAAGAAGAAGAATAACAACGACTACTACTCAACAACTATGCAACAGAATGGTTCATCATCATGTCAATGTCCGCTGCAACCTGTTCCATAGCATGTCCTTTCTTGGTCGTTTTATTTGGGACAGGATCCTTCTCTGCTCTCTTGGAAGGCCTTCTTACCTCAGGCTGCCCCTCCGTGACCCTCCACCGCCGGCCACCGTCAACGGTGGAGGCGGCTCCTTGCATGGACACCCCTTCACCACCACTACCACCACCATCCCTTGTGACTCTGACTCTGATTTGGTCAACCTCAAGATCAGCTTGCTTGGTGATTGCCATATTGGAAAGACTAGTTTTGTGATCAAGTATGTAGGGGATGAGCAAGAAAAGAGGAGCTTGCAGATGAAGGGACTTAATTTGATGGACAAAACTTTATTTGTTCAAGGAGCTAGGATTTCGTTTAGTATATGGGATGTTGCAGGTGACCCAGGTTCTATTTGTCAAATTCCAATGGCTTGTAAAGATTCAGTTGCAATTTTGATTATGTTTGATCTCACCAGTCGGTGTACACTGAATAGTGTTGTTGGATGGTACAGTAAAGCAAGAAAGTGGAATCAGACTGCAATTCCCATTCTAATAGGAACCAAATTTGATGATTTTGTTAAACTCCCCCCAGATGTGCAATGGACAATTGTAACACAGGAAAAATAA
>Glyma09g15380.1 sequence type=predicted peptide gene model=Glyma09g15380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNIEKKGRGRNREAEENHTFFMAKIIGRSRRRRITTTTTQQLCNRMVHHHVNVRCNLFHSMSFLGRFIWDRILLCSLGRPSYLRLPLRDPPPPATVNGGGGSLHGHPFTTTTTTIPCDSDSDLVNLKISLLGDCHIGKTSFVIKYVGDEQEKRSLQMKGLNLMDKTLFVQGARISFSIWDVAGDPGSICQIPMACKDSVAILIMFDLTSRCTLNSVVGWYSKARKWNQTAIPILIGTKFDDFVKLPPDVQWTIVTQARAYARAMKATLFFSSASHNINVNKIFKFIMAKLFNLPWKVERNLTLGEPTIDF* >Glyma09g15380.2 sequence type=predicted peptide gene model=Glyma09g15380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNIEKKGRGRNREAEENHTFFMAKIIGRSRRRRITTTTTQQLCNRMVHHHVNVRCNLFHSMSFLGRFIWDRILLCSLGRPSYLRLPLRDPPPPATVNGGGGSLHGHPFTTTTTTIPCDSDSDLVNLKISLLGDCHIGKTSFVIKYVGDEQEKRSLQMKGLNLMDKTLFVQGARISFSIWDVAGDPGSICQIPMACKDSVAILIMFDLTSRCTLNSVVGWYSKARKWNQTAIPILIGTKFDDFVKLPPDVQWTIVTQEK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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