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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G58060 | AT | Annotation by Michelle Graham. TAIR10: SNARE-like superfamily protein | chr5:23498277-23500128 FORWARD LENGTH=199 | SoyBase | E_val: 5.00E-124 | ISS |
| GO:0006623 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole | SoyBase | N/A | ISS |
| GO:0006810 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transport | SoyBase | N/A | ISS |
| GO:0007030 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi organization | SoyBase | N/A | ISS |
| GO:0007033 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vacuole organization | SoyBase | N/A | ISS |
| GO:0016192 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0048193 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG0861 | KOG | SNARE protein YKT6, synaptobrevin/VAMP syperfamily | JGI | ISS | |
| PTHR21136 | Panther | SNARE PROTEINS | JGI | ISS | |
| PTHR21136:SF5 | Panther | SNARE PROTEIN YKT6 | JGI | ISS | |
| PF00957 | PFAM | Synaptobrevin | JGI | ISS | |
| UniRef100_B9SBY5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Snare protein ykt6, putative n=1 Tax=Ricinus communis RepID=B9SBY5_RICCO | SoyBase | E_val: 2.00E-123 | ISS |
| UniRef100_I1L2D3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L2D3_SOYBN | SoyBase | E_val: 7.00E-149 | ISS |
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Glyma09g13840 not represented in the dataset |
Glyma09g13840 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g097700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g13840.2 sequence type=transcript gene model=Glyma09g13840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CGGTTTCATTATTTCTGAAGAGCCAAATCCTTGATGGATCCAAGTATAGTCTCAATACAACACACAACCAAATTCATTCTACCTTCCTTCGCATCACGAGCGGTTTTGCGTTCCCTCGTATACTCTACTGCTGATCACACTTCGCTCCTCGCTTAATTCCTCATTTCCCCGTTATTACACGAGAAATGATCCACCAAAAAAGTTTAGCCGACTGATCCTTCGAACTTCGAAACCTTTAAAACTTGACACCTACTAATTCATTTCATTTAACTTGTAATTTTTTTTTTTGTTTCAAATTTACCCGAGCAACTCTCTCTCTCCCTCTCTCTTGGAAGCTACTGTCTAACCATTTTTTTTTTTTACTCCTTTTGCTTTTGTGCGGCGCCACCAACCCTAAACTTTGACACCTCCAACGAGCAAAGAAAGGGGAAAGAGATATGAGCGGAAAGAAGGGATGGCGGCGGTGGTGCGAGCGGCGGTGATGAGGCGGTGCGAGTGGTGGCGTGAGCAGCGGCGAAGCGAGATAGAGGAAAGGGAAAATAAAGGGGGCTACACGGATGTTTTCCGGCGACCTGGACTACGATTGCGAGGGTTCGTGGCGGCGCTGGCAGCGGTGCTTTGGCTAACGGATCCAGAGCGGCGGCGACAGATGCAGGCGGAGGAACATTGGGTTTCTTAAATGTTGATTCTGAAGTTTATTTATGAATGCAACATTATCAACAAAAATTCATTAGGAACAACAACACATTATAACAACATAACTTTTGATCGATGTCGTAGGATGCAAAAATGATCCATTAGGCTTTGATTGATTTGGTTTCTTCAGCCGATGTCGAAGGGGTGCGCGTGCGTGTGAGAAACGAAGGGGGAGAGGAGTGTGTGGTAGACTAGTGAAAAAGGGGTAAAATTGGATAGAAAAGCTAAGTGAGAAGGGCAAATTTGGAAGGAAAAGCCTTTTATAAAGTGGTTGCCAACTGTTGCGTTTTTAATTAGATCGCCTGATAGCGTCGTGGTCTTTAGCATTTCTCACCGACTGCGAAGGGAGAGCGAATAAAAAAAGGCAAATCAAATTCGAGAGAAGGAGAGAATTTAGAGAGGGAAAGGATGAAGATCACGGCGTTGTTGGTGCTTAAATGCACGGGCGAGGGATCCGATCCGGTGATTCTGGCAAACGCTTCCGATGTCAGCCACTTCGGCTACTTCCAGCGTTCCAGCGTTAAGGAATTCATCGTTTTCGTTGGTCGTACAGTCGCCAGTCGCACTCCTCAGGGCCAACGCCAATCCGTACAACACGAAGAGTACAAGGTGCACACATACAACAGGAATGGTCTTTGCGCGTTGGGATTTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAATCAGGTAATAGATGAATATCAAAAAAACTTTGGCGAGTCATGGAGAAATGCTCAGGAAGACAGTACTCAACCATGGCCCTATTTGAATGAAGCTCTGGCAAAATTCCAGGATCCTGCAGAGGCAGACAAGTTGATGAAAATCCAGAGAGAGTTGGATGAAACCAAAATCATCCTTCATAAAACTATTGATAGTGTGCTAGCTAGAGGGGAGAAGCTGGATAGTTTAGTTGAGAAGAGTTCTGATCTGAGTGCCGCTTCGCAGATGTTCTACAAACAGGCCAAGAAAACCAATCAGTGTTGTACCATATTGTAATCAAGCTTCCAAGTCTTTCATTATGCAGCGTGCTCACTTGAATCCTGTTCCGACATGGAGACTGTTGGATAGGATAAAATAGCTTCATATGTCTATATCACTCCATTGTTTGCTTGGTTAAAATTATGTGATTTACCACGATACATGTACTGTCTTACCGTGTTGACAAATTCAAATTCCCATTTACCTTGTTGTGATGTTGACTGATAATTTATAGTATGCATAAATTATTGTTTTGGTGGAGTCATTCCATGTTAATTTGTTGTTGAATATTGACAGATTGTCATGTACCCTCACGGTCCCTGCATTTGTTATTTATTTTCTTGACCTTGGAGTGGTTCTTGCGTATTACTTTGTCATCCTATCCAAACAACAAA
>Glyma09g13840.1 sequence type=CDS gene model=Glyma09g13840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGATCACGGCGTTGTTGGTGCTTAAATGCACGGGCGAGGGATCCGATCCGGTGATTCTGGCAAACGCTTCCGATGTCAGCCACTTCGGCTACTTCCAGCGTTCCAGCGTTAAGGAATTCATCGTTTTCGTTGGTCGTACAGTCGCCAGTCGCACTCCTCAGGGCCAACGCCAATCCGTACAACACGAAGAGTACAAGGTGCACACATACAACAGGAATGGTCTTTGCGCGTTGGGATTTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAATCAGGTAATAGATGAATATCAAAAAAACTTTGGCGAGTCATGGAGAAATGCTCAGGAAGACAGTACTCAACCATGGCCCTATTTGAATGAAGCTCTGGCAAAATTCCAGGATCCTGCAGAGGCAGACAAGTTGATGAAAATCCAGAGAGAGTTGGATGAAACCAAAATCATCCTTCATAAAACTATTGATAGTGTGCTAGCTAGAGGGGAGAAGCTGGATAGTTTAGTTGAGAAGAGTTCTGATCTGAGTGCCGCTTCGCAGGTTCTTTATTTATTCCATGCCTTTCTTGCCTTTGGTTTCAATCTTTTCTTGCATAGGTGA >Glyma09g13840.2 sequence type=CDS gene model=Glyma09g13840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGATCACGGCGTTGTTGGTGCTTAAATGCACGGGCGAGGGATCCGATCCGGTGATTCTGGCAAACGCTTCCGATGTCAGCCACTTCGGCTACTTCCAGCGTTCCAGCGTTAAGGAATTCATCGTTTTCGTTGGTCGTACAGTCGCCAGTCGCACTCCTCAGGGCCAACGCCAATCCGTACAACACGAAGAGTACAAGGTGCACACATACAACAGGAATGGTCTTTGCGCGTTGGGATTTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAATCAGGTAATAGATGAATATCAAAAAAACTTTGGCGAGTCATGGAGAAATGCTCAGGAAGACAGTACTCAACCATGGCCCTATTTGAATGAAGCTCTGGCAAAATTCCAGGATCCTGCAGAGGCAGACAAGTTGATGAAAATCCAGAGAGAGTTGGATGAAACCAAAATCATCCTTCATAAAACTATTGATAGTGTGCTAGCTAGAGGGGAGAAGCTGGATAGTTTAGTTGAGAAGAGTTCTGATCTGAGTGCCGCTTCGCAGATGTTCTACAAACAGGCCAAGAAAACCAATCAGTGTTGTACCATATTGTAA
>Glyma09g13840.1 sequence type=predicted peptide gene model=Glyma09g13840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKITALLVLKCTGEGSDPVILANASDVSHFGYFQRSSVKEFIVFVGRTVASRTPQGQRQSVQHEEYKVHTYNRNGLCALGFMDDHYPIRSAFSLLNQVIDEYQKNFGESWRNAQEDSTQPWPYLNEALAKFQDPAEADKLMKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQVLYLFHAFLAFGFNLFLHR* >Glyma09g13840.2 sequence type=predicted peptide gene model=Glyma09g13840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKITALLVLKCTGEGSDPVILANASDVSHFGYFQRSSVKEFIVFVGRTVASRTPQGQRQSVQHEEYKVHTYNRNGLCALGFMDDHYPIRSAFSLLNQVIDEYQKNFGESWRNAQEDSTQPWPYLNEALAKFQDPAEADKLMKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFYKQAKKTNQCCTIL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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