Glyma09g13540 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma09g13540

Feature Type:	gene_model
Chromosome:	Gm09
Start:	15089106
stop:	15092855
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g13540

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G51350	AT	Annotation by Michelle Graham. TAIR10: Leucine-rich repeat transmembrane protein kinase family protein \| chr5:20867860-20870621 REVERSE LENGTH=895	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0007169	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway	SoyBase	N/A	ISS
GO:2000604	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of secondary growth	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF883	Panther		JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
PF00560	PFAM	Leucine Rich Repeat	JGI		ISS
PF08263	PFAM	Leucine rich repeat N-terminal domain	JGI		ISS
UniRef100_B9SC16	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Receptor protein kinase CLAVATA1, putative n=1 Tax=Ricinus communis RepID=B9SC16_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233D638	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233D638 related cluster n=1 Tax=unknown RepID=UPI000233D638	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g13540

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma09g13540 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g097500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g13540

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g13540

Limit To All Plant Sequences

>Glyma09g13540.1   sequence type=CDS   gene model=Glyma09g13540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGTTTTCAAATACTCCCACATCAAAAATCTACTTCTTGCTACCTTCATGGTATCATCAGCAGTTCTAGCAATTGATGACCCTTACTCAGAGGCACTCCTAAGCCTAAAAGCTGAGCTTGTAGATGATGATAACAGCTTGCAGAATTGGGTGGTGCCCTCTGGAGGAAAATTAACTGGGAAATCCTATGCATGTTCTTGGTCAGGCATCAAGTGTAACAATGGCTCAACAATTGTAACTTCCATAGACCTTTCCATGAAGAAACTGGGAGGTGTGGTTTCAGGGAAGCAATTCAGCATCTTCACAAACCTCACTAGTCTCAACCTGAGCCACAATTTCTTCTCTGGGAATCTTCCAGCCAAGATTTTCAACCTTACAAGCCTAACAAGCTTGGACATAAGCAGAAACAACTTTTCTGGTCCCTTCCCAGGTGGAATTCCTAGACTCCAAAACTTGATTGTGCTTGATGCCTTCAGCAACAGTTTTTCTGGGTCATTGCCTGCTGAATTCTCTCAGCTAGCATCCCTTAAGGTTCTCAATCTAGCTGGGAGCTACTTCAGAGGTTCAATTCCATCTGAATATGGTTCTTTCAAGAGCCTTGAGTTTCTTCATCTTGCAGGAAATTCTCTTTCAGGAAGCATACCTCCAGAACTTGGTCATCTCAACACAGTGACCCACATGGAAATTGGCTACAACCTATACCAGGGTTTTATTCCACCTGAAATAGGTAACATGAGCCAGCTTCAGTATCTTGACATAGCAGGAGCAAATCTTTCTGGCCTTATACCAAAGCAACTCTCCAACCTCAGCAATTTGCAATCACTTTTCCTCTTCAGCAACCAGCTCACAGGATCAATACCAAGTGAGCTCAGCAACATTGAACCTCTCACAGATTTAGACCTCTCTGATAACTTCTTCACAGGGTCCATTCCTGAAAGCTTCTCAGACCTCGAGAACCTGAGACTCCTAAGTGTCATGTACAATGACATGAGTGGCACTGTTCCCGAAGGCATTGCACAACTTCCATCCTTGGAAACCCTTCTCATTTGGAACAACAAATTCTCCGGCTCGCTTCCTAGGAGCTTAGGGAGGAACTCCAAACTCAAGTGGGTGGATGCTTCCACAAATGATTTAGTTGGAAACATACCACCAGACATTTGTGTGAGTGGAGAATTGTTTAAGCTGATCCTGTTTTCAAACAAGTTCACTGGTGGCCTTTCATCAATCTCCAATTGTTCGTCCCTCGTTCGCCTTCGCCTCGAAGATAACTTGTTCTCAGGAGAAATCACTTTGAAATTCAGCCTTCTTCCTGATATCTTATATGTTGATCTGTCCAGGAACAACTTTGTTGGTGGGATTCCCTCAGATATTTCTCAAGCCACTCAATTGGAGTATTTCAATGTCTCTTATAATCAGCAATTAGGGGGGATCATCCCTTCACAAACATGGTCATTGCCCCAACTTCAGAATTTTTCAGCATCTTCTTGTGGTATTTCTAGTGATCTTCCCCCATTTGAATCCTGCAAATCAATTTCAGTTGTTGATCTAGATAGCAATAACTTATCTGGAACAATCCCAAACAGTGTTTCCAAATGTCAAACTCTTGAGAAAATCAACCTATCCAACAACAATTTGACAGGTCATATACCTGATGAGCTTGCCACTATTCCTGTTCTTGGTGTAGTGGACCTATCAAACAATAACTTCAATGGCACCATACCTGCTAAGTTTGGTAGTTGTTCTAATTTACAACTTCTCAATGTGTCTTTCAACAATATCTCTGGTTCAATACCAGCAGGAAAATCATTCAAATTGATGGGAAGAAGTGCATTTGTTGGAAATTCAGAGCTATGTGGAGCACCATTGCAACCATGTCCTGATTCAGTTGGAATATTGGGAAGCAAATGCTCGTGGAAGGTTACACGTATCGTGCTACTCTCTGTAGGGTTGCTAATAGTCCTTCTGGGACTTGCTTTTGGAATGTCTTACTTGAGAAGAGGAATCAAAAGTCAATGGAAGATGGTCTCATTCGCCGGTCTCCCTCAATTCACGGCAAATGATGTTTTGACAAGCCTCAGTGCCACAACAAAACCTACAGAAGTTCAATCACCATCAGTTACAAAGGCTGTTCTGCCTACAGGAATAACAGTTTTGGTCAAGAAGATTGAGTGGGAAGAGAGGAGCAGCAAGGTTGCGTCGGAATTTATAGTAAGACTGGGAAATGCAAGGCACAAGAATTTAGTCAGATTGTTGGGGTTTTGCCACAACCCGCATCTAGTCTATCTTTTGTATGATTACTTGCCTAATGGGAACTTGGCTGAGAAAATGGAAATGAAATGGGATTGGGCTGCAAAATTCAGAACAGTAGTTGGAATTGCCAGAGGACTTTGCTTCCTTCACCATGAATGTTACCCAGCTATACCTCATGGTGACTTGAAACCCAGCAACATTGTATTTGATGAAAATATGGAACCCCATTTGGCAGAATTTGGGTTCAAGCAAGTATTGAGGTGGAGCAAAGGCTCATCACCAACCAGAAATAAGTGGGAAACAGTCACAAAAGAGGAACTGTGTATGGATATCTACAAGTTTGGGGAGATGATTCTGGAAATTGTGACTGGCGGAAGGTTGACAAATGCAGGAGCCAGCATACACAGCAAACCATGGGAGGTTCTTTTGAGAGAAATTTATAATGAGAATGAAGGGACTTCTGCAAGTTCATTGCATGAGATTAAACTGGTTCTTGAGGTTGCGATGCTTTGCACCCAAAGCAGGTCATCCGATCGGCCATCAATGGAGGATGTTCTTAAGCTTCTGTCAGGGCTAAAGCATCTAGAAGATGGCAGAACTTCAAAAGAAGGATAA

Predicted protein sequences of Glyma09g13540

Limit To All Plant Sequences

>Glyma09g13540.1   sequence type=predicted peptide   gene model=Glyma09g13540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEVFKYSHIKNLLLATFMVSSAVLAIDDPYSEALLSLKAELVDDDNSLQNWVVPSGGKLTGKSYACSWSGIKCNNGSTIVTSIDLSMKKLGGVVSGKQFSIFTNLTSLNLSHNFFSGNLPAKIFNLTSLTSLDISRNNFSGPFPGGIPRLQNLIVLDAFSNSFSGSLPAEFSQLASLKVLNLAGSYFRGSIPSEYGSFKSLEFLHLAGNSLSGSIPPELGHLNTVTHMEIGYNLYQGFIPPEIGNMSQLQYLDIAGANLSGLIPKQLSNLSNLQSLFLFSNQLTGSIPSELSNIEPLTDLDLSDNFFTGSIPESFSDLENLRLLSVMYNDMSGTVPEGIAQLPSLETLLIWNNKFSGSLPRSLGRNSKLKWVDASTNDLVGNIPPDICVSGELFKLILFSNKFTGGLSSISNCSSLVRLRLEDNLFSGEITLKFSLLPDILYVDLSRNNFVGGIPSDISQATQLEYFNVSYNQQLGGIIPSQTWSLPQLQNFSASSCGISSDLPPFESCKSISVVDLDSNNLSGTIPNSVSKCQTLEKINLSNNNLTGHIPDELATIPVLGVVDLSNNNFNGTIPAKFGSCSNLQLLNVSFNNISGSIPAGKSFKLMGRSAFVGNSELCGAPLQPCPDSVGILGSKCSWKVTRIVLLSVGLLIVLLGLAFGMSYLRRGIKSQWKMVSFAGLPQFTANDVLTSLSATTKPTEVQSPSVTKAVLPTGITVLVKKIEWEERSSKVASEFIVRLGNARHKNLVRLLGFCHNPHLVYLLYDYLPNGNLAEKMEMKWDWAAKFRTVVGIARGLCFLHHECYPAIPHGDLKPSNIVFDENMEPHLAEFGFKQVLRWSKGSSPTRNKWETVTKEELCMDIYKFGEMILEIVTGGRLTNAGASIHSKPWEVLLREIYNENEGTSASSLHEIKLVLEVAMLCTQSRSSDRPSMEDVLKLLSGLKHLEDGRTSKEG*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain