SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G77110 | AT | Annotation by Michelle Graham. TAIR10: Auxin efflux carrier family protein | chr1:28970855-28974408 FORWARD LENGTH=570 | SoyBase | E_val: 6.00E-129 | ISS |
| GO:0009855 | GO-bp | Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry | SoyBase | N/A | ISS |
| GO:0009926 | GO-bp | Annotation by Michelle Graham. GO Biological Process: auxin polar transport | SoyBase | N/A | ISS |
| GO:0010014 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem initiation | SoyBase | N/A | ISS |
| GO:0010073 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem maintenance | SoyBase | N/A | ISS |
| GO:0048451 | GO-bp | Annotation by Michelle Graham. GO Biological Process: petal formation | SoyBase | N/A | ISS |
| GO:0048453 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sepal formation | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0005215 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transporter activity | SoyBase | N/A | ISS |
| GO:0009672 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: auxin:hydrogen symporter activity | SoyBase | N/A | ISS |
| PF03547 | PFAM | Membrane transport protein | JGI | ISS | |
| UniRef100_Q8GV73 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Auxin efflux carrier component n=1 Tax=Medicago truncatula RepID=Q8GV73_MEDTR | SoyBase | E_val: 8.00E-152 | ISS |
| UniRef100_UPI000233D637 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D637 related cluster n=1 Tax=unknown RepID=UPI000233D637 | SoyBase | E_val: 0 | ISS |
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Glyma09g13500 not represented in the dataset |
Glyma09g13500 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g097300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g13500.1 sequence type=CDS gene model=Glyma09g13500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATAAACGATAAAGAAGTGTACAATGTTATGGCAGCTCTTGTGCCCCTATATGTGCCAATGATATTGGCCTATTACTCCGTGCGGTGGTGGAAGATATTCACTCCGGAACAGTGCTCCGGCATAAACCGCTTCGTGGCAATATTTGCAATTCCTTTCCTTACATTCCATTTCCTATCCTCCAACAGCCCTTACACTATGAACATTTTGTTCATAGCCGCAGACACTCTTCAAAAAGTTGTGATTTTGGGTGCCCTATTTCTATGGACTGCCTTCGCAAAGCGTGGTGGCGGTCTCGACTGGACCATCACACTCTTCTCTCTTTCCACCCTACCAAACACACTCATCGTCGGTGTCCCGCTTCTGACAGCTATGTATGGAGACTCATCAGCCAGTCTCATGAGCCAACTTGTGTTCATGCAAGGTGTCTTGTGGTTTACCCTAATGTTGTTCTTGTACGAATATCAAGGCGCTATGCACCTCTTTTTGAATCGGATACCTGATAGTGGAGATTCCATCATCACCACATTCACCGTTGATCCTGATGTTAACACTCTCAATGGCAACGAGCCGCTACTAGTTGACCTAGAAAAGAAAGAAAATGGAGAACTTCATGTCATGGTAAGAAGTTCTTCATTAAAAATCTTTAACCGTTCAACCGAGATGTGTTGTGCCCATTTACCAAAGCGAAGAGCTTCAAGTTTTAGTACAATTCTTGATCTCCAAATGAAACATGAATCAATCATTGACACGAGTTCGAGTCCCAAAGTAATAGAGGACAAGGAGGTCAAGATTGTGCATGGGATCCAATATCCCTTAAGCAAGGGCCCAAAAGAGGTAAAAATTGAAGAAAAAGATGCATATAAAAAACAACAAATGCCACGTGCTAGTGTCATGGTAAGGCTCACTCTCTCCATGGTTTGGCGGAATCTCGTGAGAAACCCTAATACATACGCGAGTTTTTTTGGATTAGTATGGTCTCTCATATCATTTAGGTGGAACATCAAAATGCCATCCATTATAAATGGTTCCATTTTAATACTATCACAAACTGCAACGGGAATAGCCATGTTTAGTATGGGTCTATTCATGGCATTACAACCCAAGATCATAGCTTGTGGAAAAACTTCGGCAGCAATGTCTATCGTAGCTCGATGTTTGGTTGGTCCTGCAGTAATTGGTGTAACCTCTATAGTCATCGGTATTCGAGGAGTTCTTCTACGTGTTGCAATTGTTCAGGCTGCTATACCTCAATCTATTGTTGCCTTTGTATTTGCCAAAGAATACAATATCCACGCAGATATACTTAGCACCGCGGTTATCTTCGGAACGGCGATTTCATTGCCCGCAACAATAATGTACTTTGTGCTTCTTGGACTCTAA
>Glyma09g13500.1 sequence type=predicted peptide gene model=Glyma09g13500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MINDKEVYNVMAALVPLYVPMILAYYSVRWWKIFTPEQCSGINRFVAIFAIPFLTFHFLSSNSPYTMNILFIAADTLQKVVILGALFLWTAFAKRGGGLDWTITLFSLSTLPNTLIVGVPLLTAMYGDSSASLMSQLVFMQGVLWFTLMLFLYEYQGAMHLFLNRIPDSGDSIITTFTVDPDVNTLNGNEPLLVDLEKKENGELHVMVRSSSLKIFNRSTEMCCAHLPKRRASSFSTILDLQMKHESIIDTSSSPKVIEDKEVKIVHGIQYPLSKGPKEVKIEEKDAYKKQQMPRASVMVRLTLSMVWRNLVRNPNTYASFFGLVWSLISFRWNIKMPSIINGSILILSQTATGIAMFSMGLFMALQPKIIACGKTSAAMSIVARCLVGPAVIGVTSIVIGIRGVLLRVAIVQAAIPQSIVAFVFAKEYNIHADILSTAVIFGTAISLPATIMYFVLLGL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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