Glyma09g13170 - SoyBase

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Report for Sequence Feature Glyma09g13170

Feature Type:	gene_model
Chromosome:	Gm09
Start:	14483184
stop:	14486066
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g13170

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G13100	AT	Annotation by Michelle Graham. TAIR10: Major facilitator superfamily protein \| chr2:5390206-5391764 FORWARD LENGTH=493	SoyBase	E_val: 0	ISS
GO:0008643	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate transport	SoyBase	N/A	ISS
GO:0015706	GO-bp	Annotation by Michelle Graham. GO Biological Process: nitrate transport	SoyBase	N/A	ISS
GO:0055062	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphate ion homeostasis	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005351	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sugar:hydrogen symporter activity	SoyBase	N/A	ISS
KOG2533	KOG	Permease of the major facilitator superfamily	JGI		ISS
PTHR11662	Panther	PHOSPHATE TRANSPORTER-RELATED	JGI		ISS
PTHR11662:SF82	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF07690	PFAM	Major Facilitator Superfamily	JGI		ISS
UniRef100_B9T2N3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Regulatory protein uhpC, putative n=1 Tax=Ricinus communis RepID=B9T2N3_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1L2B8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L2B8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g13170

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma09g13170 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g096500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g13170

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g13170

Limit To All Plant Sequences

>Glyma09g13170.1   sequence type=CDS   gene model=Glyma09g13170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAATCCAAGAGTTTGAGCCTGGCTCCAGCTCTCACATTCTTTCCAGGCCTGAAACCCCCTCACAAAACCCTACTATTCCACCAAATCTGTGTTCTTGTTATCACCTTCCTTGCATATGCTTCTTTCCATGCCTCTAGGAAGCCCCCCAGCATTGTCAAGAGTGTTCTGGGGCCCACAGTGCCATCCAATGGAACTCAAGTAGTTTCTGACATGAGTTCCATTGATGCAGGGTGGCCCCCTTTCAATGGAACACGGGGCACACGCCGGCTCGGTGAGCTCGATCTTGCATTCCTTACTTCCTACTCCATTGGCATGTATTTGGCTGGCCATGTTGGAGATAGGATTGATTTGAGGTTGTTCCTTGTATTTGGGATGATGGGTAGTGGCCTTTTTACTGTACTTTTTGGGTTAGGGTATTGGTTGGATGTTCATGTGTTGGGGTTTTATGTTGGTGTTCAGATTTTTTGTGGAGTGTTTCAGTCAATTGGGTGGCCTTGTGTGGTTGCAATTGTGGGGAATTGGCTAGGGGAATCAAAGAGGGGATTGATAATGGGGGTATGGAACTCGCATACCTCAGTTGGGAATATCATTGGTTCGGTTGTGGCTTCGGGGGTTTTGGAGTTTGGCTGGGGTTGGTCATTTGTGGTGCCTGGAATCCTGATCATTTTGGTAGGGATTTTGGTGTTTTTGTTTCTTGTTGTGAACCCTGAGGATATGGGATTTGTGCATCCTGGGATGGACATCGAAATGAGTGTTGAAACGGATAGTGCAGAGAATCGGCAGAAAGTTGAATCGGAGGAAGCAAAGCTGATTGCGTCTGAAATTTCAGATTCTTCATCTGCAATTGGATTTTTGGAAGCATGGAAGTTGCCAGGAGTGGCTCCGTTTGCTTTCTGTCTCTTTTTCTCGAAGCTCGTGGCTTACACTTTTCTGTATTGGTTGCCCTTCTACATAAGGCACACAGCTGTTGCAGGTGTGCATATGTCTCACAAAACTGCTGGGTTACTTTCAACCATATTTGACATTGGGGGAGTCCTAGGTGGAATCACAGCTGGTTTCATTTCTGACCTAATAGAAGCACGGGCTATTACTTCAATTCTGTTCTTGTTTCTATCAATTCCAGCTCTTGCTTTGTATCGCATTTTTGGGAGCCTCTCCATGTTGATCAACATCATTTTAATGTTTCTGTCGGGATTTTTGGTGAATGGTCCATACTCACTTATCACAACTGCTGTGGCTGCTGATCTTGGTACACAAAGCATGAATGATCGGAATTCTCGGGCGCTGGCTACTGTTACTGCAATCATAGACGGCACTGGTTCTGTTGGAGCTGCCCTTGGTCCCCTTTTGGCAGGATATATTTCAACTAGGGGATGGAACAGTGTCTTTTTTATGCTCATTCTGTCTATTTTCTTTGCTGGTTTATTCCTGATTCGTATAGCAAGAACTGAGATAAGAGAGAAGCTTTCAGGAAAGTGA

Predicted protein sequences of Glyma09g13170

Limit To All Plant Sequences

>Glyma09g13170.1   sequence type=predicted peptide   gene model=Glyma09g13170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQSKSLSLAPALTFFPGLKPPHKTLLFHQICVLVITFLAYASFHASRKPPSIVKSVLGPTVPSNGTQVVSDMSSIDAGWPPFNGTRGTRRLGELDLAFLTSYSIGMYLAGHVGDRIDLRLFLVFGMMGSGLFTVLFGLGYWLDVHVLGFYVGVQIFCGVFQSIGWPCVVAIVGNWLGESKRGLIMGVWNSHTSVGNIIGSVVASGVLEFGWGWSFVVPGILIILVGILVFLFLVVNPEDMGFVHPGMDIEMSVETDSAENRQKVESEEAKLIASEISDSSSAIGFLEAWKLPGVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHMSHKTAGLLSTIFDIGGVLGGITAGFISDLIEARAITSILFLFLSIPALALYRIFGSLSMLINIILMFLSGFLVNGPYSLITTAVAADLGTQSMNDRNSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWNSVFFMLILSIFFAGLFLIRIARTEIREKLSGK*

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