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Report for Sequence Feature Glyma09g12970

Feature Type:gene_model
Chromosome:Gm09
Start:14064608
stop:14066597
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g12970
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G15580AT Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr2:6797687-6798815 FORWARD LENGTH=196 SoyBaseE_val: 4.00E-49ISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR22766Panther RING FINGER PROTEIN 24-RELATED JGI ISS
PTHR22766:SF21Panther SUBFAMILY NOT NAMED JGI ISS
PF00097PFAM Zinc finger, C3HC4 type (RING finger) JGI ISS
UniRef100_D7L4D8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7L4D8_ARALL SoyBaseE_val: 3.00E-48ISS
UniRef100_I1L2B7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L2B7_SOYBN SoyBaseE_val: 1.00E-137ISS

Expression Patterns of Glyma09g12970
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma09g12970 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g096300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g12970
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g12970
>Glyma09g12970.1   sequence type=CDS   gene model=Glyma09g12970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGGAATGCTTCCTGGAGTTGAATGTGCTAGAAGGAGAAGGTTTCGTCGATGTTCGGATTCAAATTCAACTTCTTTGGGATCACATGCATCCACAAGGCGTTCTTCTTTCTGTTTGTATGCTAGTAACCATGATCAATGTCGCCTTTTCTCATCCTCTTCCCTGCAAAGAAGCATGTTATACCAGGCACACCCTGATGAGAATATGGGAGGAGTGGCCAGAGAAGCCAAACAGAGATTGGATGACAAGTTCAGAGCTCAAAGGATGTCAGAAAACAAAAGGCAAAACAACACAAAATGTGTGGAGGGCAAAAGAACAAGCATAATAGTGTTGCACACAGAGGAATATGGGTCAAAGAAAAGTGGTTCAAGGAGGTTCAGTTGGACCAAATGGAGCTGGAAAGCATCAGAACAAGAGGAATGTGCTGTGTGCTTGGAATCATTCAGAGTTGGAGAGACACTGATCCATCTTCCTTGTGCCCATAGGTTCCATGACAGATGCTTGAAACCATGGTTGGAAAATAATTCTTATTGTCCATGTTGCAGAACTACCATTCTTCCCCTCTAG
Predicted protein sequences of Glyma09g12970
>Glyma09g12970.1   sequence type=predicted peptide   gene model=Glyma09g12970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGMLPGVECARRRRFRRCSDSNSTSLGSHASTRRSSFCLYASNHDQCRLFSSSSLQRSMLYQAHPDENMGGVAREAKQRLDDKFRAQRMSENKRQNNTKCVEGKRTSIIVLHTEEYGSKKSGSRRFSWTKWSWKASEQEECAVCLESFRVGETLIHLPCAHRFHDRCLKPWLENNSYCPCCRTTILPL*






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