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Report for Sequence Feature Glyma09g12881

Feature Type:gene_model
Chromosome:Gm09
Start:13915787
stop:13917415
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g12881
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G46920AT Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain | chr3:17280430-17284857 REVERSE LENGTH=1171 SoyBaseE_val: 3.00E-127ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0009644GO-bp Annotation by Michelle Graham. GO Biological Process: response to high light intensity SoyBaseN/AISS
GO:0042542GO-bp Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0004712GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine/tyrosine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
PTHR23257Panther SERINE-THREONINE PROTEIN KINASE JGI ISS
PTHR23257:SF393Panther JGI ISS
PF07714PFAM Protein tyrosine kinase JGI ISS
UniRef100_B9SC34UniRef Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine protein kinase, putative n=1 Tax=Ricinus communis RepID=B9SC34_RICCO SoyBaseE_val: 1.00E-133ISS
UniRef100_I1MHZ8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MHZ8_SOYBN SoyBaseE_val: 7.00E-149ISS

Expression Patterns of Glyma09g12881
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g12881 not represented in the dataset
Glyma09g12881 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma09g12881 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g095900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g12881
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g12881
>Glyma09g12881.1   sequence type=CDS   gene model=Glyma09g12881   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTAGCATTCTACAGTGTTGTGCTTGATGGCCCCAGAGGTTCTGTGGCGACAGTAACTGAGTATATGGTTAATGGTTCTCTAAGAAATGCCTTGCAGAAGAATGGGAGGAATCTTGACAAGCGCAAGCGTCTTTTGATTGCAATGGATGTGGCCTTTGGTATGGAGTACCTGCATGGAAAAAATATAGTTCACTTTGACTTGAAAAGTGACAACTTGCTTGTGAATCTCCGGGATCCGCACCGCCCAATATGCAAGGTTGGTGACTTGGGTCTGTCCAAAGTGAAGTGCCAGACTTTAATATCTGGTGGTGTTAGAGGAACTCTACCTTGGATGGCCCCAGAACTGCTAAACGGGAGCAGTAGCCTTGTTTCAGAGAAGGTTGACGTGCTTTCATTTGGTATTGTCATGTGGGAACTCCTCACGGGAGAAGAGCCATATGCTGATTTGCACTATGGGGCCATCATAGGTGGTATTGTAAACAACACATTACGACCTCCAGTTCCAGAATCTTGTGATCCAGAATGGAGATTGCTGATGGAGAGGTGCTGGTCATCAGAACCATCAGAAAGACCTTCCTTCTCTGAGATTGCTAATGGATTACGTTCCATGGCAACCAAGATCTCTCCCAAAGGACAAAATCAACAGCAGCAACCTGCTGCACTGCAAAGTCAAGTTCAGAAATGA
Predicted protein sequences of Glyma09g12881
>Glyma09g12881.1   sequence type=predicted peptide   gene model=Glyma09g12881   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVAFYSVVLDGPRGSVATVTEYMVNGSLRNALQKNGRNLDKRKRLLIAMDVAFGMEYLHGKNIVHFDLKSDNLLVNLRDPHRPICKVGDLGLSKVKCQTLISGGVRGTLPWMAPELLNGSSSLVSEKVDVLSFGIVMWELLTGEEPYADLHYGAIIGGIVNNTLRPPVPESCDPEWRLLMERCWSSEPSERPSFSEIANGLRSMATKISPKGQNQQQQPAALQSQVQK*






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