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Report for Sequence Feature Glyma09g12860

Feature Type:gene_model
Chromosome:Gm09
Start:13914436
stop:13914870
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g12860
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G25240AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:8746779-8747174 REVERSE LENGTH=131 SoyBaseE_val: 3.00E-15ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_C1K028UniRef Annotation by Michelle Graham. Most informative UniRef hit: Stress induced protein n=1 Tax=Vitis vinifera RepID=C1K028_VITVI SoyBaseE_val: 8.00E-22ISS
UniRef100_I1L2B4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L2B4_SOYBN SoyBaseE_val: 7.00E-102ISS

Expression Patterns of Glyma09g12860
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma09g12860 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g095800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g12860
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g12860
>Glyma09g12860.1   sequence type=CDS   gene model=Glyma09g12860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCTTCTGAGGGAAGGCCATTGGTGGAGGCAGTGGAGCACAAGGAAGATTTCTATGAGCACCAAGAGCCAAGTGGATGTGGGTATGGATGCTTTCGGGGTTTCGGGTGGAGTTGGTGTAGTCGTAGAGGCAGTGAAGAAGGTAAAGGCCTGGTGGAGCAGAAGGGTGATTCGAGGCTGAGTTATAAATTGAGGAAGATAAAGGAGTTTTCAGAAGTAATTGCAGGTCCCAAGTGGAAAACATTCATCAGAAAGATAAGCGGGTATGGAAGGAAGCAGCAGCAGCAGAAGAACAGGTTTCAGTATGATGAACACAGCTATGCTCTCAACTTCAATAGTGGGGCTCAGAGCGAAGATGATGACATGCCCCCCAGTTTCTCTGCTAGATTCAGTGCTCCTTTTCCCTCCACTCGTCGCCAAACTGAACAATGA
Predicted protein sequences of Glyma09g12860
>Glyma09g12860.1   sequence type=predicted peptide   gene model=Glyma09g12860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAASEGRPLVEAVEHKEDFYEHQEPSGCGYGCFRGFGWSWCSRRGSEEGKGLVEQKGDSRLSYKLRKIKEFSEVIAGPKWKTFIRKISGYGRKQQQQKNRFQYDEHSYALNFNSGAQSEDDDMPPSFSARFSAPFPSTRRQTEQ*






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