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Report for Sequence Feature Glyma09g12841

Feature Type:gene_model
Chromosome:Gm09
Start:13865296
stop:13866040
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g12841
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G11964AT Annotation by Michelle Graham. TAIR10: RNA binding;RNA binding | chr3:3793957-3806626 REVERSE LENGTH=1896 SoyBaseE_val: 4.00E-26ISS
GO:0001510GO-bp Annotation by Michelle Graham. GO Biological Process: RNA methylation SoyBaseN/AISS
GO:0006396GO-bp Annotation by Michelle Graham. GO Biological Process: RNA processing SoyBaseN/AISS
GO:0006397GO-bp Annotation by Michelle Graham. GO Biological Process: mRNA processing SoyBaseN/AISS
GO:0006606GO-bp Annotation by Michelle Graham. GO Biological Process: protein import into nucleus SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005730GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleolus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
PTHR23270Panther PROGRAMMED CELL DEATH PROTEIN 11 (PRE-RRNA PROCESSING PROTEIN RRP5) JGI ISS
UniRef100_B9T015UniRef Annotation by Michelle Graham. Most informative UniRef hit: Programmed cell death protein, putative n=2 Tax=Ricinus communis RepID=B9T015_RICCO SoyBaseE_val: 2.00E-24ISS
UniRef100_UPI000233D7ABUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233D7AB related cluster n=1 Tax=unknown RepID=UPI000233D7AB SoyBaseE_val: 7.00E-27ISS

Expression Patterns of Glyma09g12841
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g12841 not represented in the dataset
Glyma09g12841 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma09g12841 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma09g12841
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g12841
>Glyma09g12841.1   sequence type=CDS   gene model=Glyma09g12841   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTACTTTCTACAATTCTACTTCCCTACTGGAACAACTTATGCTATTTTCTACTTTGTGTGTTTCAACTATTTAAACCAGTCTGTTTCTACAAATCAGAAAAGAAAGCAAAGGAGGAGAGGGAGAAGCAAATAAGGGCTGCTGAGGAAAGATTACTGGAGGATGATGTCCCTATAACTGCTGATGAGTTTGAAAAGATGATTAGAAGCTCTCCTAATAGCAGTTTCACCTGGATAAAATATATGGATTTCATGGTTTCTATGGCTGCTGTTGAGAAAGCCCGCTCAATTGCCGAAAGGTATATCTAA
Predicted protein sequences of Glyma09g12841
>Glyma09g12841.1   sequence type=predicted peptide   gene model=Glyma09g12841   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLSTILLPYWNNLCYFLLCVFQLFKPVCFYKSEKKAKEEREKQIRAAEERLLEDDVPITADEFEKMIRSSPNSSFTWIKYMDFMVSMAAVEKARSIAERYI*






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