SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G25220 | AT | Annotation by Michelle Graham. TAIR10: KNOTTED1-like homeobox gene 3 | chr5:8736208-8738115 FORWARD LENGTH=431 | SoyBase | E_val: 2.00E-163 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009416 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to light stimulus | SoyBase | N/A | ISS |
| GO:0009722 | GO-bp | Annotation by Michelle Graham. GO Biological Process: detection of cytokinin stimulus | SoyBase | N/A | ISS |
| GO:0048513 | GO-bp | Annotation by Michelle Graham. GO Biological Process: organ development | SoyBase | N/A | ISS |
| GO:0071345 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to cytokine stimulus | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0043565 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding | SoyBase | N/A | ISS |
| KOG0773 | KOG | Transcription factor MEIS1 and related HOX domain proteins | JGI | ISS | |
| PTHR11850 | Panther | HOMEOBOX PROTEIN | JGI | ISS | |
| PTHR11850:SF15 | Panther | HOMEOBOX PROTEIN KNOTTED-1 | JGI | ISS | |
| PF00046 | PFAM | Homeobox domain | JGI | ISS | |
| PF03789 | PFAM | ELK domain | JGI | ISS | |
| PF03790 | PFAM | KNOX1 domain | JGI | ISS | |
| PF03791 | PFAM | KNOX2 domain | JGI | ISS | |
| UniRef100_G7JHU3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Homeobox protein knotted-1-like protein n=1 Tax=Medicago truncatula RepID=G7JHU3_MEDTR | SoyBase | E_val: 9.00E-177 | ISS |
| UniRef100_I1L2B3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L2B3_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma09g12820 not represented in the dataset |
Glyma09g12820 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g095700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g12820.1 sequence type=CDS gene model=Glyma09g12820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTTCCACGAGCATCTACCGCACGAAATCACGTTCCAGCCGTTCGCGGAGGAGCAGCAGCAGCAGCAGTTAGGTCAGAGCCGGGACATGCAGCGGCTCCTGCCACTCTCGGGCGGGGCGCCGACGTGGTTGAACAACAGCAACGCCGCCACGCTCCGCCAGCAGAATTTCCTCCACCTGCAGCCGGAATCCGCCGCGACGGCGGCGCAGCAAAACGACGACGTTCGTGCTATGGATCGGAACCGGACCGAGAGCAACTCTGAAGCGGACGATTTGGCGGAATACAAAGCAGATATTTTAGGTCACCCTCTCTACGACCAGCTCCTATCGGCGCACGTCTCGTGCTTGAGAATCGCCACGCCCGTTGACCAGCTTCCAAGGATCGACGCGCAGCTTCAGCAGTCGCAGCGCGTCGTCGACAAGTACTCCGGCCTCGGAAATGGAAACGGCGTCGTCGATGACAAAGAGCTCGATCAATTCATGACGCATTATGTTATACTGCTCTGTGCTTTCAAAGAACAATTGCAACAACATGTCCGTGTTCATGCCATGGAAGCTGTTATGGCTTGTTGGGAGTTGGAACAATCTCTACAAAGCTTGACTGGTGTATCTCCCGGCGAAGGAACGGGTGCAACAATGTCCGACAATGAAGAAGATCAGGCAGAGAGTAATGCAAACTTATACGAAGGAGGCATGGATGGAGCTGATAGTCTCAGCTTTGGTCCTCTTGTTCCCACTGAGACTGAAAGATCTTTGATGGAGCGTGTGAGGCAGGAGCTGAAGCACGAGTTAAAACAGGGTTACAAGGACAAGATTGTGGATATAAGAGAGGAAATTCTACGAAAGAGAAGAGCCGGGAAGCTACCCGGCGACACAACTTCCCTTTTAAAAGCTTGGTGGCAGTCACATTCTAAATGGCCATATCCAACAGAAGAGGACAAGGCAAGGTTGGTGCAGGAAACAGGCTTGCAATTAAAGCAGATAAATAACTGGTTCATAAATCAAAGAAAAAGGAATTGGCATACTAATCCTTCGTCTTCTAGTGGCTCCAAAAGCAAACGCAAGAGTAGTGGTGCAGGGGAATCAAGTAACCAGAGCTTCATGTGA
>Glyma09g12820.1 sequence type=predicted peptide gene model=Glyma09g12820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAFHEHLPHEITFQPFAEEQQQQQLGQSRDMQRLLPLSGGAPTWLNNSNAATLRQQNFLHLQPESAATAAQQNDDVRAMDRNRTESNSEADDLAEYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVDKYSGLGNGNGVVDDKELDQFMTHYVILLCAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGTGATMSDNEEDQAESNANLYEGGMDGADSLSFGPLVPTETERSLMERVRQELKHELKQGYKDKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSSGSKSKRKSSGAGESSNQSFM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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