Glyma09g12480 - SoyBase

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Report for Sequence Feature Glyma09g12480

Feature Type:	gene_model
Chromosome:	Gm09
Start:	13291204
stop:	13292896
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g12480

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G35150	AT	Annotation by Michelle Graham. TAIR10: O-methyltransferase family protein \| chr4:16726948-16728531 REVERSE LENGTH=325	SoyBase	E_val: 1.00E-50	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0008168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity	SoyBase	N/A	ISS
GO:0008171	GO-mf	Annotation by Michelle Graham. GO Molecular Function: O-methyltransferase activity	SoyBase	N/A	ISS
GO:0046983	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity	SoyBase	N/A	ISS
KOG3178	KOG	Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases	JGI		ISS
PTHR11746	Panther	O-METHYLTRANSFERASE	JGI		ISS
PTHR11746:SF53	Panther	MAF PROTEIN	JGI		ISS
PF00891	PFAM	O-methyltransferase	JGI		ISS
PF08100	PFAM	Dimerisation domain	JGI		ISS
UniRef100_G7L6D6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Isoflavone-7-O-methyltransferase n=1 Tax=Medicago truncatula RepID=G7L6D6_MEDTR	SoyBase	E_val: 9.00E-132	ISS
UniRef100_UPI0002337FF9	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337FF9 related cluster n=1 Tax=unknown RepID=UPI0002337FF9	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g12480

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g12480 not represented in the dataset	Glyma09g12480 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma09g12480 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g094600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g12480

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g12480

Limit To All Plant Sequences

>Glyma09g12480.2   sequence type=transcript   gene model=Glyma09g12480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGTAAATATCGCTTGCAGTAGTAATGGATAACCAAAATGCCATCGAGTTCTTTGAAGGCCAAAACCTTTTGTACATGCAGATATTTGGTAACCTAAGACCTGTGTGTCTTATGTGGGCTTGCGAACTAGGTATTCCAGACATAATATCCAACCATGGGAAACCCATTACTCTTCTTGAGTTGGTCTCAGCCCTGCAAATTCCACCATCTAAGGTTATGGCAAGTGATTCCCGAATGGTAGACTTGGTACTAAAAAATTGCACTTCAATTTTTGAGGAGCTAGATTCCATCGTGGATGTAGGTGGTGGAACTGGAACCACAGCCAGAATTATTTGTGAGACATTTCCTAAGTTGAAATGTGTTGTGCTTGACCTTCCTCATGTTGTAGCAAACTTGACGGGAAGCAATCGTTTAAGTTTTGTCGGCAGCGATATGTTCAAATCCATCCCTCAAGCCGATGCAGTCCTACTAAAGTGGGTTTTACATGATTGGAATGAAGAAAATTGCATAAAGATCCTCAAAAGGTGTAAAGATTCTATTTCAAGCAAAGGCAACAGAGGGAAAATAATAATCATAGATGCAGTAATAAATGAAAAGCTAGATGACCAGGATAAGACTCAAACTAAGCTCTGTATGGATATAGCTATGATGATCGCTTTTAATGGAAACGAGCGAACTGAAGAAGAATGGAAACAACTCTTCATTGGAGCAGGATTCCAACACTACAAAATATATCATACTTTTGGTTTTAGATCTCTTATTGAGGTCTATCCTTAATGCTTAGGCACTATATATTTCAGATTAATTTTTTTTCCTCTAATTTATTATTTAGGTTTAATTTAATTTTTAAATTTAGAAAATTAATTATTTTGATACTTTAATTTTTAAAGTCAATTTATTTTTTTAAAAAAATATGTATTTTATAACGGTTTCAAACCACTTAGTAATAGTTTCAAATCGTCGT

>Glyma09g12480.3   sequence type=transcript   gene model=Glyma09g12480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGTAAATATCGCTTGCAGTAGTAATGGATAACCAAAATGCCATCGAGTTCTTTGAAGGCCAAAACCTTTTGTACATGCAGATATTTGGTAACCTAAGACCTGTGTGTCTTATGTGGGCTTGCGAACTAGGTATTCCAGACATAATATCCAACCATGGGAAACCCATTACTCTTCTTGAGTTGGTCTCAGCCCTGCAAATTCCACCATCTAAGGTGGGTTTTGTGAAGCGATTCATGCGCTTTTTGGCACACAATAGAATCTTTGATATCCATGAGAGCCAGGAAGATCATCATGAATTAGCGTTATGGCAAGTGATTCCCGAATGGTAGACTTGGTACTAAAAAATTGCACTTCAATTTTTGAGGAGCTAGATTCCATCGTGGATGTAGGTGGTGGAACTGGAACCACAGCCAGAATTATTTGTGAGACATTTCCTAAGTTGAAATGTGTTGTGCTTGACCTTCCTCATGTTGTAGCAAACTTGACGGGAAGCAATCGTTTAAGTTTTGTCGGCAGCGATATGTTCAAATCCATCCCTCAAGCCGATGCAGTCCTACTAAAGTGGGTTTTACATGATTGGAATGAAGAAAATTGCATAAAGATCCTCAAAAGGTGTAAAGATTCTATTTCAAGCAAAGGCAACAGAGGGAAAATAATAATCATAGATGCAGTAATAAATGAAAAGCTAGATGACCAGGATAAGACTCAAACTAAGCTCTGTATGGATATAGCTATGATGATCGCTTTTAATGGAAACGAGCGAACTGAAGAAGAATGGAAACAACTCTTCATTGGAGCAGGATTCCAACACTACAAAATATATCATACTTTTGGTTTTAGATCTCTTATTGAGGTCTATCCTTAATGCTTAGGCACTATATATTTCAGATTAATTTTTTTTCCTCTAATTTATTATTTAGGTTTAATTTAATTTTTAAATTTAGAAAATTAATTATTTTGATACTTTAATTTTTAAAGTCAATTTATTTTTTTAAAAAAATATGTATTTTATAACGGTTTCAAACCACTTAGTAATAGTTTCAAATCGTCGT

>Glyma09g12480.4   sequence type=transcript   gene model=Glyma09g12480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTCATTATTCAAAATATTTTTTTACTTTTCAAAACATTATGTAAAATATTTTAAGAACGAAAAATAAAACAAATATATCTTTAAGGACTAAAATAATTTTTTTAAGGATAAAAGTAAAAAAATAGTAAAATACAGAAACAAAAAATGTATCTGAGTTTTTTTTTATCAACATATGTTAATTATTAATAAGAAAAATCAAATTCATGATTTTTTTTTCTTTTTCTTCTTTCTTAACCTCTCAAGTAACCTTATATGTCTAGGTTATGGCAAGTGATTCCCGAATGGTAGACTTGGTACTAAAAAATTGCACTTCAATTTTTGAGGAGCTAGATTCCATCGTGGATGTAGGTGGTGGAACTGGAACCACAGCCAGAATTATTTGTGAGACATTTCCTAAGTTGAAATGTGTTGTGCTTGACCTTCCTCATGTTGTAGCAAACTTGACGGGAAGCAATCGTTTAAGTTTTGTCGGCAGCGATATGTTCAAATCCATCCCTCAAGCCGATGCAGTCCTACTAAAGTGGGTTTTACATGATTGGAATGAAGAAAATTGCATAAAGATCCTCAAAAGGTGTAAAGATTCTATTTCAAGCAAAGGCAACAGAGGGAAAATAATAATCATAGATGCAGTAATAAATGAAAAGCTAGATGACCAGGATAAGACTCAAACTAAGCTCTGTATGGATATAGCTATGATGATCGCTTTTAATGGAAACGAGCGAACTGAAGAAGAATGGAAACAACTCTTCATTGGAGCAGGATTCCAACACTACAAAATATATCATACTTTTGGTTTTAGATCTCTTATTGAGGTCTATCCTTAATGCTTAGGCACTATATATTTCAGATTAATTTTTTTTCCTCTAATTTATTATTTAGGTTTAATTTAATTTTTAAATTTAGAAAATTAATTATTTTGATACTTTAATTTTTAAAGTCAATTTATTTTTTTAAAAAAATATGTATTTTATAACGGTTTCAAACCACTTAGTAATAGTTTCAAATCGTCGT

Coding sequences of Glyma09g12480

Limit To All Plant Sequences

>Glyma09g12480.1   sequence type=CDS   gene model=Glyma09g12480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAACCAAAATGCCATCGAGTTCTTTGAAGGCCAAAACCTTTTGTACATGCAGATATTTGGTAACCTAAGACCTGTGTGTCTTATGTGGGCTTGCGAACTAGGTATTCCAGACATAATATCCAACCATGGGAAACCCATTACTCTTCTTGAGTTGGTCTCAGCCCTGCAAATTCCACCATCTAAGGTGGGTTTTGTGAAGCGATTCATGCGCTTTTTGGCACACAATAGAATCTTTGATATCCATGAGAGCCAGGAAGATCATCATGAATTAGCGTATGCTCTAACTCCTGCATCAAAGCTTCTAGTCAATGACAGTATCCATTGTTTATCTCCAATGCTTCAGTTCATGACTGATCCTTGCAATTTTTTTTTGGTTATGGCAAGTGATTCCCGAATGGTAGACTTGGTACTAAAAAATTGCACTTCAATTTTTGAGGAGCTAGATTCCATCGTGGATGTAGGTGGTGGAACTGGAACCACAGCCAGAATTATTTGTGAGACATTTCCTAAGTTGAAATGTGTTGTGCTTGACCTTCCTCATGTTGTAGCAAACTTGACGGGAAGCAATCGTTTAAGTTTTGTCGGCAGCGATATGTTCAAATCCATCCCTCAAGCCGATGCAGTCCTACTAAAGTGGGTTTTACATGATTGGAATGAAGAAAATTGCATAAAGATCCTCAAAAGGTGTAAAGATTCTATTTCAAGCAAAGGCAACAGAGGGAAAATAATAATCATAGATGCAGTAATAAATGAAAAGCTAGATGACCAGGATAAGACTCAAACTAAGCTCTGTATGGATATAGCTATGATGATCGCTTTTAATGGAAACGAGCGAACTGAAGAAGAATGGAAACAACTCTTCATTGGAGCAGGATTCCAACACTACAAAATATATCATACTTTTGGTTTTAGATCTCTTATTGAGGTCTATCCTTAA

>Glyma09g12480.2   sequence type=CDS   gene model=Glyma09g12480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAACCAAAATGCCATCGAGTTCTTTGAAGGCCAAAACCTTTTGTACATGCAGATATTTGGTAACCTAAGACCTGTGTGTCTTATGTGGGCTTGCGAACTAGGTATTCCAGACATAATATCCAACCATGGGAAACCCATTACTCTTCTTGAGTTGGTCTCAGCCCTGCAAATTCCACCATCTAAGGTTATGGCAAGTGATTCCCGAATGGTAGACTTGGTACTAAAAAATTGCACTTCAATTTTTGAGGAGCTAGATTCCATCGTGGATGTAGGTGGTGGAACTGGAACCACAGCCAGAATTATTTGTGAGACATTTCCTAAGTTGAAATGTGTTGTGCTTGACCTTCCTCATGTTGTAGCAAACTTGACGGGAAGCAATCGTTTAAGTTTTGTCGGCAGCGATATGTTCAAATCCATCCCTCAAGCCGATGCAGTCCTACTAAAGTGGGTTTTACATGATTGGAATGAAGAAAATTGCATAAAGATCCTCAAAAGGTGTAAAGATTCTATTTCAAGCAAAGGCAACAGAGGGAAAATAATAATCATAGATGCAGTAATAAATGAAAAGCTAGATGACCAGGATAAGACTCAAACTAAGCTCTGTATGGATATAGCTATGATGATCGCTTTTAATGGAAACGAGCGAACTGAAGAAGAATGGAAACAACTCTTCATTGGAGCAGGATTCCAACACTACAAAATATATCATACTTTTGGTTTTAGATCTCTTATTGAGGTCTATCCTTAA

>Glyma09g12480.3   sequence type=CDS   gene model=Glyma09g12480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAGTGATTCCCGAATGGTAGACTTGGTACTAAAAAATTGCACTTCAATTTTTGAGGAGCTAGATTCCATCGTGGATGTAGGTGGTGGAACTGGAACCACAGCCAGAATTATTTGTGAGACATTTCCTAAGTTGAAATGTGTTGTGCTTGACCTTCCTCATGTTGTAGCAAACTTGACGGGAAGCAATCGTTTAAGTTTTGTCGGCAGCGATATGTTCAAATCCATCCCTCAAGCCGATGCAGTCCTACTAAAGTGGGTTTTACATGATTGGAATGAAGAAAATTGCATAAAGATCCTCAAAAGGTGTAAAGATTCTATTTCAAGCAAAGGCAACAGAGGGAAAATAATAATCATAGATGCAGTAATAAATGAAAAGCTAGATGACCAGGATAAGACTCAAACTAAGCTCTGTATGGATATAGCTATGATGATCGCTTTTAATGGAAACGAGCGAACTGAAGAAGAATGGAAACAACTCTTCATTGGAGCAGGATTCCAACACTACAAAATATATCATACTTTTGGTTTTAGATCTCTTATTGAGGTCTATCCTTAA

>Glyma09g12480.4   sequence type=CDS   gene model=Glyma09g12480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAGTGATTCCCGAATGGTAGACTTGGTACTAAAAAATTGCACTTCAATTTTTGAGGAGCTAGATTCCATCGTGGATGTAGGTGGTGGAACTGGAACCACAGCCAGAATTATTTGTGAGACATTTCCTAAGTTGAAATGTGTTGTGCTTGACCTTCCTCATGTTGTAGCAAACTTGACGGGAAGCAATCGTTTAAGTTTTGTCGGCAGCGATATGTTCAAATCCATCCCTCAAGCCGATGCAGTCCTACTAAAGTGGGTTTTACATGATTGGAATGAAGAAAATTGCATAAAGATCCTCAAAAGGTGTAAAGATTCTATTTCAAGCAAAGGCAACAGAGGGAAAATAATAATCATAGATGCAGTAATAAATGAAAAGCTAGATGACCAGGATAAGACTCAAACTAAGCTCTGTATGGATATAGCTATGATGATCGCTTTTAATGGAAACGAGCGAACTGAAGAAGAATGGAAACAACTCTTCATTGGAGCAGGATTCCAACACTACAAAATATATCATACTTTTGGTTTTAGATCTCTTATTGAGGTCTATCCTTAA

Predicted protein sequences of Glyma09g12480

Limit To All Plant Sequences

>Glyma09g12480.1   sequence type=predicted peptide   gene model=Glyma09g12480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDNQNAIEFFEGQNLLYMQIFGNLRPVCLMWACELGIPDIISNHGKPITLLELVSALQIPPSKVGFVKRFMRFLAHNRIFDIHESQEDHHELAYALTPASKLLVNDSIHCLSPMLQFMTDPCNFFLVMASDSRMVDLVLKNCTSIFEELDSIVDVGGGTGTTARIICETFPKLKCVVLDLPHVVANLTGSNRLSFVGSDMFKSIPQADAVLLKWVLHDWNEENCIKILKRCKDSISSKGNRGKIIIIDAVINEKLDDQDKTQTKLCMDIAMMIAFNGNERTEEEWKQLFIGAGFQHYKIYHTFGFRSLIEVYP*

>Glyma09g12480.2   sequence type=predicted peptide   gene model=Glyma09g12480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDNQNAIEFFEGQNLLYMQIFGNLRPVCLMWACELGIPDIISNHGKPITLLELVSALQIPPSKVMASDSRMVDLVLKNCTSIFEELDSIVDVGGGTGTTARIICETFPKLKCVVLDLPHVVANLTGSNRLSFVGSDMFKSIPQADAVLLKWVLHDWNEENCIKILKRCKDSISSKGNRGKIIIIDAVINEKLDDQDKTQTKLCMDIAMMIAFNGNERTEEEWKQLFIGAGFQHYKIYHTFGFRSLIEVYP*

>Glyma09g12480.3   sequence type=predicted peptide   gene model=Glyma09g12480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASDSRMVDLVLKNCTSIFEELDSIVDVGGGTGTTARIICETFPKLKCVVLDLPHVVANLTGSNRLSFVGSDMFKSIPQADAVLLKWVLHDWNEENCIKILKRCKDSISSKGNRGKIIIIDAVINEKLDDQDKTQTKLCMDIAMMIAFNGNERTEEEWKQLFIGAGFQHYKIYHTFGFRSLIEVYP*

>Glyma09g12480.4   sequence type=predicted peptide   gene model=Glyma09g12480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASDSRMVDLVLKNCTSIFEELDSIVDVGGGTGTTARIICETFPKLKCVVLDLPHVVANLTGSNRLSFVGSDMFKSIPQADAVLLKWVLHDWNEENCIKILKRCKDSISSKGNRGKIIIIDAVINEKLDDQDKTQTKLCMDIAMMIAFNGNERTEEEWKQLFIGAGFQHYKIYHTFGFRSLIEVYP*

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