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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G23740 | AT | Annotation by Michelle Graham. TAIR10: ribosomal protein S11-beta | chr5:8008251-8009330 REVERSE LENGTH=159 | SoyBase | E_val: 3.00E-90 | ISS |
| GO:0006412 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translation | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005840 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: ribosome | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0022627 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosolic small ribosomal subunit | SoyBase | N/A | ISS |
| GO:0003735 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome | SoyBase | N/A | ISS |
| KOG1728 | KOG | 40S ribosomal protein S11 | JGI | ISS | |
| PTHR10744 | Panther | 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER | JGI | ISS | |
| PF00366 | PFAM | Ribosomal protein S17 | JGI | ISS | |
| UniRef100_C6T0V5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T0V5_SOYBN | SoyBase | E_val: 9.00E-109 | ISS |
| UniRef100_D7MBM0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 40S ribosomal protein S11 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MBM0_ARALL | SoyBase | E_val: 4.00E-98 | ISS |
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Glyma09g12430 not represented in the dataset |
Glyma09g12430 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g094300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g12430.2 sequence type=transcript gene model=Glyma09g12430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTTCTTTCGTGGCCTTGCATTAACTCGCTATTCATAATTTGCTTTTTAAATTTTGGCTTACAGACAGAGAAGGCTTTTCTGAAGCAACCAAAAGTGTTTCTATGCTCTAAGAAAGGTGGGAAGGGAAAGAGGCCTGGGAAAGGTGGGAATCGCTTTTGGAAGTCAATTGGGCTTGGATTCAAGACTCCCAGAGATGCCATTGAAGGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATTCGGGGTCGTATCCTAGCCGGTACTTGTCACAGTGCTAAGATGACAAGGACCATTATTGTGAGGAGGAATTATCTTCATTTTATTAAGAAATACCAGAGATATGAAAAGCGGCATTCAAATATTCCTTCACACATATCACCTTGTTTCCGTGTTAAGGAAGGAGATCATGTTATTATTGGCCAATGCAGGCCAATCTCAAAGACAGTGAGGTTCAATGTGTTGAAAGTGATCCCCGCTGGATCCTCTAGCGGTGCAAAGAAGGCTTTTACTGGAATGTGAGATTTGAATTTTCAGTTCTCATTGAAGGGTAGTGTTACCTTACAAAGTTAGTAGAAGCCTCTGTTCAAATACATCAAGGTTGAGTTAAAGATTGAATCAATTTTTTGATATCTTGTAATGCTTTGAGTGGTTATATGTTACAGACTTTAATTGTTGAATAGTAGTTGCAGTTATTTCTGTTTTCAGGTCATGCTTACTCTTATCTTCTTGTCTCCATTCTCTTTATTTATTTTTTTCCTTCATCGTTGGATTTTTTGCTACAATAAAATGCTCAATGGGATTA
>Glyma09g12430.1 sequence type=CDS gene model=Glyma09g12430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGAACAAACAGAGAAGGCTTTTCTGAAGCAACCAAAAGTGTTTCTATGCTCTAAGAAAGGTGGGAAGGGAAAGAGGCCTGGGAAAGGTGGGAATCGCTTTTGGAAGTCAATTGGGCTTGGATTCAAGACTCCCAGAGATGCCATTGAAGGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATTCGGGGTCGTATCCTAGCCGGTACTTGTCACAGTGCTAAGATGACAAGGACCATTATTGTGAGGAGGAATTATCTTCATTTTATTAAGAAATACCAGAGATATGAAAAGCGGCATTCAAATATTCCTTCACACATATCACCTTGTTTCCGTGTTAAGGAAGGAGATCATGTTATTATTGGCCAATGCAGGCCAATCTCAAAGACAGTGAGGTTCAATGTGTTGAAAGTGATCCCCGCTGGATCCTCTAGCGGTGCAAAGAAGGCTTTTACTGGAATGTGA >Glyma09g12430.2 sequence type=CDS gene model=Glyma09g12430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTTCTTTCGTGGCCTTGCATTAACTCGCTATTCATAATTTGCTTTTTAAATTTTGGCTTACAGACAGAGAAGGCTTTTCTGAAGCAACCAAAAGTGTTTCTATGCTCTAAGAAAGGTGGGAAGGGAAAGAGGCCTGGGAAAGGTGGGAATCGCTTTTGGAAGTCAATTGGGCTTGGATTCAAGACTCCCAGAGATGCCATTGAAGGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATTCGGGGTCGTATCCTAGCCGGTACTTGTCACAGTGCTAAGATGACAAGGACCATTATTGTGAGGAGGAATTATCTTCATTTTATTAAGAAATACCAGAGATATGAAAAGCGGCATTCAAATATTCCTTCACACATATCACCTTGTTTCCGTGTTAAGGAAGGAGATCATGTTATTATTGGCCAATGCAGGCCAATCTCAAAGACAGTGAGGTTCAATGTGTTGAAAGTGATCCCCGCTGGATCCTCTAGCGGTGCAAAGAAGGCTTTTACTGGAATGTGA
>Glyma09g12430.1 sequence type=predicted peptide gene model=Glyma09g12430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAEQTEKAFLKQPKVFLCSKKGGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGNVSIRGRILAGTCHSAKMTRTIIVRRNYLHFIKKYQRYEKRHSNIPSHISPCFRVKEGDHVIIGQCRPISKTVRFNVLKVIPAGSSSGAKKAFTGM* >Glyma09g12430.2 sequence type=predicted peptide gene model=Glyma09g12430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVLSWPCINSLFIICFLNFGLQTEKAFLKQPKVFLCSKKGGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGNVSIRGRILAGTCHSAKMTRTIIVRRNYLHFIKKYQRYEKRHSNIPSHISPCFRVKEGDHVIIGQCRPISKTVRFNVLKVIPAGSSSGAKKAFTGM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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