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Report for Sequence Feature Glyma09g12430

Feature Type:gene_model
Chromosome:Gm09
Start:13190308
stop:13192808
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g12430
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G23740AT Annotation by Michelle Graham. TAIR10: ribosomal protein S11-beta | chr5:8008251-8009330 REVERSE LENGTH=159 SoyBaseE_val: 3.00E-90ISS
GO:0006412GO-bp Annotation by Michelle Graham. GO Biological Process: translation SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005840GO-cc Annotation by Michelle Graham. GO Cellular Compartment: ribosome SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0022627GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosolic small ribosomal subunit SoyBaseN/AISS
GO:0003735GO-mf Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome SoyBaseN/AISS
KOG1728 KOG 40S ribosomal protein S11 JGI ISS
PTHR10744Panther 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER JGI ISS
PF00366PFAM Ribosomal protein S17 JGI ISS
UniRef100_C6T0V5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T0V5_SOYBN SoyBaseE_val: 9.00E-109ISS
UniRef100_D7MBM0UniRef Annotation by Michelle Graham. Most informative UniRef hit: 40S ribosomal protein S11 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MBM0_ARALL SoyBaseE_val: 4.00E-98ISS

Expression Patterns of Glyma09g12430
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma09g12430 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g094300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g12430
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma09g12430
>Glyma09g12430.2   sequence type=transcript   gene model=Glyma09g12430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTCTTTCGTGGCCTTGCATTAACTCGCTATTCATAATTTGCTTTTTAAATTTTGGCTTACAGACAGAGAAGGCTTTTCTGAAGCAACCAAAAGTGTTTCTATGCTCTAAGAAAGGTGGGAAGGGAAAGAGGCCTGGGAAAGGTGGGAATCGCTTTTGGAAGTCAATTGGGCTTGGATTCAAGACTCCCAGAGATGCCATTGAAGGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATTCGGGGTCGTATCCTAGCCGGTACTTGTCACAGTGCTAAGATGACAAGGACCATTATTGTGAGGAGGAATTATCTTCATTTTATTAAGAAATACCAGAGATATGAAAAGCGGCATTCAAATATTCCTTCACACATATCACCTTGTTTCCGTGTTAAGGAAGGAGATCATGTTATTATTGGCCAATGCAGGCCAATCTCAAAGACAGTGAGGTTCAATGTGTTGAAAGTGATCCCCGCTGGATCCTCTAGCGGTGCAAAGAAGGCTTTTACTGGAATGTGAGATTTGAATTTTCAGTTCTCATTGAAGGGTAGTGTTACCTTACAAAGTTAGTAGAAGCCTCTGTTCAAATACATCAAGGTTGAGTTAAAGATTGAATCAATTTTTTGATATCTTGTAATGCTTTGAGTGGTTATATGTTACAGACTTTAATTGTTGAATAGTAGTTGCAGTTATTTCTGTTTTCAGGTCATGCTTACTCTTATCTTCTTGTCTCCATTCTCTTTATTTATTTTTTTCCTTCATCGTTGGATTTTTTGCTACAATAAAATGCTCAATGGGATTA
Coding sequences of Glyma09g12430
>Glyma09g12430.1   sequence type=CDS   gene model=Glyma09g12430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGAACAAACAGAGAAGGCTTTTCTGAAGCAACCAAAAGTGTTTCTATGCTCTAAGAAAGGTGGGAAGGGAAAGAGGCCTGGGAAAGGTGGGAATCGCTTTTGGAAGTCAATTGGGCTTGGATTCAAGACTCCCAGAGATGCCATTGAAGGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATTCGGGGTCGTATCCTAGCCGGTACTTGTCACAGTGCTAAGATGACAAGGACCATTATTGTGAGGAGGAATTATCTTCATTTTATTAAGAAATACCAGAGATATGAAAAGCGGCATTCAAATATTCCTTCACACATATCACCTTGTTTCCGTGTTAAGGAAGGAGATCATGTTATTATTGGCCAATGCAGGCCAATCTCAAAGACAGTGAGGTTCAATGTGTTGAAAGTGATCCCCGCTGGATCCTCTAGCGGTGCAAAGAAGGCTTTTACTGGAATGTGA

>Glyma09g12430.2   sequence type=CDS   gene model=Glyma09g12430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTCTTTCGTGGCCTTGCATTAACTCGCTATTCATAATTTGCTTTTTAAATTTTGGCTTACAGACAGAGAAGGCTTTTCTGAAGCAACCAAAAGTGTTTCTATGCTCTAAGAAAGGTGGGAAGGGAAAGAGGCCTGGGAAAGGTGGGAATCGCTTTTGGAAGTCAATTGGGCTTGGATTCAAGACTCCCAGAGATGCCATTGAAGGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATTCGGGGTCGTATCCTAGCCGGTACTTGTCACAGTGCTAAGATGACAAGGACCATTATTGTGAGGAGGAATTATCTTCATTTTATTAAGAAATACCAGAGATATGAAAAGCGGCATTCAAATATTCCTTCACACATATCACCTTGTTTCCGTGTTAAGGAAGGAGATCATGTTATTATTGGCCAATGCAGGCCAATCTCAAAGACAGTGAGGTTCAATGTGTTGAAAGTGATCCCCGCTGGATCCTCTAGCGGTGCAAAGAAGGCTTTTACTGGAATGTGA
Predicted protein sequences of Glyma09g12430
>Glyma09g12430.1   sequence type=predicted peptide   gene model=Glyma09g12430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEQTEKAFLKQPKVFLCSKKGGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGNVSIRGRILAGTCHSAKMTRTIIVRRNYLHFIKKYQRYEKRHSNIPSHISPCFRVKEGDHVIIGQCRPISKTVRFNVLKVIPAGSSSGAKKAFTGM*

>Glyma09g12430.2   sequence type=predicted peptide   gene model=Glyma09g12430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLSWPCINSLFIICFLNFGLQTEKAFLKQPKVFLCSKKGGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGNVSIRGRILAGTCHSAKMTRTIIVRRNYLHFIKKYQRYEKRHSNIPSHISPCFRVKEGDHVIIGQCRPISKTVRFNVLKVIPAGSSSGAKKAFTGM*






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