Glyma09g12390 - SoyBase

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Report for Sequence Feature Glyma09g12390

Feature Type:	gene_model
Chromosome:	Gm09
Start:	13030625
stop:	13035187
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g12390

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G41040	AT	Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr2:17121499-17123064 FORWARD LENGTH=352	SoyBase	E_val: 5.00E-164	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0080167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to karrikin	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0010287	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastoglobule	SoyBase	N/A	ISS
GO:0008168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity	SoyBase	N/A	ISS
PTHR10108	Panther	METHYLTRANSFERASE	JGI		ISS
PTHR10108:SF157	Panther	METHYLTRANSFERASE-RELATED	JGI		ISS
PF08241	PFAM	Methyltransferase domain	JGI		ISS
UniRef100_B9SZN5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phosphatidylethanolamine n-methyltransferase, putative n=1 Tax=Ricinus communis RepID=B9SZN5_RICCO	SoyBase	E_val: 7.00E-173	ISS
UniRef100_I1L2A0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L2A0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g12390

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g12390 not represented in the dataset	Glyma09g12390 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g12390

Paralog	Evidence	Comments
Glyma15g24000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g12390 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g093900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g12390

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g12390

Limit To All Plant Sequences

>Glyma09g12390.2   sequence type=transcript   gene model=Glyma09g12390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCTAGATATCATATGCATGATGGCAGGTGTAATTAGTTCTGTATGTTTTCAAAATCCTGTGTCGTACTTTTAGTAATTAACTAAATGGTTTTTGATCTTCAGACCTGCAATCTACAGGTCTGGTTTCATGTGTAAGAGATGTAAGAAGACATATTCTAGCAAAGATAGGTATCTGGATCTGACTGTAACTGCTGGATTGAGAGACTACACTGAAATTCAACCTGCTCGGACTGAGCTTTTCAGGAGTCCCCTGGTTTCATTCTTGTATGAAAGAGGTTGGCGTCAGAATTTCAGGCAAAGTGGCTTTCCTGGTCCTGATGAAGAGTTCAAAATGGCTCAAGAGTACTTTGAATCTGCTGAAGGTGGACTTCTTGTTGATGTTAGCTGTGGTAGTGGTTTATTTTCCCGAAAATTCGCCAAATCTGGAACATATTCGGGAGTCATAGCACTAGATTTTTCTGAGAATATGCTTCGTCAATGTTATGATTTCATTGAGAAAGATGACACACTTTCAACAAATAATATTGCTCTTGTAAGGGCAGATGTTTCTAGACTTCCCTTCTCATCAGGTTCGGTTGATGCTGTTCATGCTGGTGCAGCTTTGCATTGCTGGCCATCTCCCTCCAATGCTGTTGCTGAAATCACCCGGACACTAAAAAATGGTGGAGTATTTGTTGGGAGCACTTTTCTGCGTTATAGTTCAAAAACTCCCTGGTTTTTACGCCCTTTCAGGGAGAGGACTCCACAAGGCTATGGCTATCTAACAGAGGAAGAGATCAAAGACCTTTGCACCTCATGTGGTCTTACCAATTACTCAAGCAAAATTCAGCAGGCTTTTATTATGTTCACAGCTCAGAAGCCATAAAACTGGGTTTGATCTATTTATAACATTGATTCTCCACTGCATTTTATCAATTCCTTCTGTATGTATGTATTGTATCACTTGTTTCATCTGTAAAGAAGAAATTGTAAATAAATGAGAAATGAAAAGGTCAAAACCAGAGTCCGGTGTGTTCGCAGGTTGTAAAATGCATCGTGTATCAGTGCCTAATAATATATCCAAATTCTGACAATTTTTGTAAAGAATATATATTTTGTTGGCTTAAATATATTTTTGGTTCTAGTAA

>Glyma09g12390.3   sequence type=transcript   gene model=Glyma09g12390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CATTTTTTTCCCTTATTTTTCTTAAATATTTTTATGGCTCCGGAGTCAAAAGTTCCTGGAGCAAGTAGGAAGAAGAAAGCGAGTGACGAGGGAAACGTTTAAACCATATATGTTTTGTTGTTTCTAGCTCCATTCTATAGCAATGGCCACGTCTGTTCTTAGTCCTCCTTTCTTTCATCCTCTGCATCAACTTCAATTCTCGAAATGCCCCCGCCTTTCTTCTAAATCCCACTTTCGCCCTCGCCTCCTCCGCTCCATATCCCAAAGAACCATTCGCGCTATCTCCGCAGTTGCCGCAGAATCAGAGTTAGGTACACAGCAGGATCATGCAATTGAAGCAGACATCTTTGCTTGCCCTGTATGTTATGAACCATTGATAAGAAAAGGTCCTTCTGGCCTTAACTTGTCTGGTTTCATGTGTAAGAGATGTAAGAAGACATATTCTAGCAAAGATAGGTATCTGGATCTGACTGTAACTGCTGGATTGAGAGACTACACTGAAATTCAACCTGCTCGGACTGAGCTTTTCAGGAGTCCCCTGGTTTCATTCTTGTATGAAAGAGGTTGGCGTCAGAATTTCAGGCAAAGTGGCTTTCCTGGTCCTGATGAAGAGTTCAAAATGGCTCAAGAGTACTTTGAATCTGCTGAAGGTGGACTTCTTGTTGATGTTAGCTGTGGTAGTGGTTTATTTTCCCGAAAATTCGCCAAATCTGGAACATATTCGGGAGTCATAGCACTAGATTTTTCTGAGAATATGCTTCGTCAATGTTATGATTTCATTGAGAAAGATGACACACTTTCAACAAATAATATTGCTCTTGTAAGGGCAGATGTTTCTAGACTTCCCTTCTCATCAGGTTCGGTTGATGCTGTTCATGCTGGTGCAGCTTTGCATTGCTGGCCATCTCCCTCCAATGCTGTTGCTGAAATCACCCGGACACTAAAAAATGGTGGAGTATTTGTTGGGAGCACTTTTCTGCGTTATAGTTCAAAAACTCCCTGGTTTTTACGCCCTTTCAGGGAGAGGACTCCACAAGGCTATGGCTATCTAACAGAGGAAGAGATCAAAGACCTTTGCACCTCATGTGGTCTTACCAATTACTCAAGCAAAATTCAGCAGGCTTTTATTATGTTCACAGCTCAGAAGCCATAAAACTGGGTTTGATCTATTTATAACATTGATTCTCCACTGCATTTTATCAATTCCTTCTGTATGTATGTATTGTATCACTTGTTTCATCTGTAAAGAAGAAATTGTAAATAAATGAGAAATGAAAAGGTCAAAACCAGAGTCCGGTGTGTTCGCAGGTTGTAAAATGCATCGTGTATCAGTGCCTAATAATATATCCAAATTCTGACAATTTTTGTAAAGAATATATATTTTGTTGGCTTAAATATATTTTTGGTTCTAGTAA

Coding sequences of Glyma09g12390

Limit To All Plant Sequences

>Glyma09g12390.1   sequence type=CDS   gene model=Glyma09g12390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACGTCTGTTCTTAGTCCTCCTTTCTTTCATCCTCTGCATCAACTTCAATTCTCGAAATGCCCCCGCCTTTCTTCTAAATCCCACTTTCGCCCTCGCCTCCTCCGCTCCATATCCCAAAGAACCATTCGCGCTATCTCCGCAGTTGCCGCAGAATCAGAGTTAGGTACACAGCAGGATCATGCAATTGAAGCAGACATCTTTGCTTGCCCTGTATGTTATGAACCATTGATAAGAAAAGGTCCTTCTGGCCTTAACTTACCTGCAATCTACAGGTCTGGTTTCATGTGTAAGAGATGTAAGAAGACATATTCTAGCAAAGATAGGTATCTGGATCTGACTGTAACTGCTGGATTGAGAGACTACACTGAAATTCAACCTGCTCGGACTGAGCTTTTCAGGAGTCCCCTGGTTTCATTCTTGTATGAAAGAGGTTGGCGTCAGAATTTCAGGCAAAGTGGCTTTCCTGGTCCTGATGAAGAGTTCAAAATGGCTCAAGAGTACTTTGAATCTGCTGAAGGTGGACTTCTTGTTGATGTTAGCTGTGGTAGTGGTTTATTTTCCCGAAAATTCGCCAAATCTGGAACATATTCGGGAGTCATAGCACTAGATTTTTCTGAGAATATGCTTCGTCAATGTTATGATTTCATTGAGAAAGATGACACACTTTCAACAAATAATATTGCTCTTGTAAGGGCAGATGTTTCTAGACTTCCCTTCTCATCAGGTTCGGTTGATGCTGTTCATGCTGGTGCAGCTTTGCATTGCTGGCCATCTCCCTCCAATGCTGTTGCTGAAATCACCCGGACACTAAAAAATGGTGGAGTATTTGTTGGGAGCACTTTTCTGCGTTATAGTTCAAAAACTCCCTGGTTTTTACGCCCTTTCAGGGAGAGGACTCCACAAGGCTATGGCTATCTAACAGAGGAAGAGATCAAAGACCTTTGCACCTCATGTGGTCTTACCAATTACTCAAGCAAAATTCAGCAGGCTTTTATTATGTTCACAGCTCAGAAGCCATAA

>Glyma09g12390.2   sequence type=CDS   gene model=Glyma09g12390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGTAAGAGATGTAAGAAGACATATTCTAGCAAAGATAGGTATCTGGATCTGACTGTAACTGCTGGATTGAGAGACTACACTGAAATTCAACCTGCTCGGACTGAGCTTTTCAGGAGTCCCCTGGTTTCATTCTTGTATGAAAGAGGTTGGCGTCAGAATTTCAGGCAAAGTGGCTTTCCTGGTCCTGATGAAGAGTTCAAAATGGCTCAAGAGTACTTTGAATCTGCTGAAGGTGGACTTCTTGTTGATGTTAGCTGTGGTAGTGGTTTATTTTCCCGAAAATTCGCCAAATCTGGAACATATTCGGGAGTCATAGCACTAGATTTTTCTGAGAATATGCTTCGTCAATGTTATGATTTCATTGAGAAAGATGACACACTTTCAACAAATAATATTGCTCTTGTAAGGGCAGATGTTTCTAGACTTCCCTTCTCATCAGGTTCGGTTGATGCTGTTCATGCTGGTGCAGCTTTGCATTGCTGGCCATCTCCCTCCAATGCTGTTGCTGAAATCACCCGGACACTAAAAAATGGTGGAGTATTTGTTGGGAGCACTTTTCTGCGTTATAGTTCAAAAACTCCCTGGTTTTTACGCCCTTTCAGGGAGAGGACTCCACAAGGCTATGGCTATCTAACAGAGGAAGAGATCAAAGACCTTTGCACCTCATGTGGTCTTACCAATTACTCAAGCAAAATTCAGCAGGCTTTTATTATGTTCACAGCTCAGAAGCCATAA

>Glyma09g12390.3   sequence type=CDS   gene model=Glyma09g12390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACGTCTGTTCTTAGTCCTCCTTTCTTTCATCCTCTGCATCAACTTCAATTCTCGAAATGCCCCCGCCTTTCTTCTAAATCCCACTTTCGCCCTCGCCTCCTCCGCTCCATATCCCAAAGAACCATTCGCGCTATCTCCGCAGTTGCCGCAGAATCAGAGTTAGGTACACAGCAGGATCATGCAATTGAAGCAGACATCTTTGCTTGCCCTGTATGTTATGAACCATTGATAAGAAAAGGTCCTTCTGGCCTTAACTTGTCTGGTTTCATGTGTAAGAGATGTAAGAAGACATATTCTAGCAAAGATAGGTATCTGGATCTGACTGTAACTGCTGGATTGAGAGACTACACTGAAATTCAACCTGCTCGGACTGAGCTTTTCAGGAGTCCCCTGGTTTCATTCTTGTATGAAAGAGGTTGGCGTCAGAATTTCAGGCAAAGTGGCTTTCCTGGTCCTGATGAAGAGTTCAAAATGGCTCAAGAGTACTTTGAATCTGCTGAAGGTGGACTTCTTGTTGATGTTAGCTGTGGTAGTGGTTTATTTTCCCGAAAATTCGCCAAATCTGGAACATATTCGGGAGTCATAGCACTAGATTTTTCTGAGAATATGCTTCGTCAATGTTATGATTTCATTGAGAAAGATGACACACTTTCAACAAATAATATTGCTCTTGTAAGGGCAGATGTTTCTAGACTTCCCTTCTCATCAGGTTCGGTTGATGCTGTTCATGCTGGTGCAGCTTTGCATTGCTGGCCATCTCCCTCCAATGCTGTTGCTGAAATCACCCGGACACTAAAAAATGGTGGAGTATTTGTTGGGAGCACTTTTCTGCGTTATAGTTCAAAAACTCCCTGGTTTTTACGCCCTTTCAGGGAGAGGACTCCACAAGGCTATGGCTATCTAACAGAGGAAGAGATCAAAGACCTTTGCACCTCATGTGGTCTTACCAATTACTCAAGCAAAATTCAGCAGGCTTTTATTATGTTCACAGCTCAGAAGCCATAA

Predicted protein sequences of Glyma09g12390

Limit To All Plant Sequences

>Glyma09g12390.1   sequence type=predicted peptide   gene model=Glyma09g12390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATSVLSPPFFHPLHQLQFSKCPRLSSKSHFRPRLLRSISQRTIRAISAVAAESELGTQQDHAIEADIFACPVCYEPLIRKGPSGLNLPAIYRSGFMCKRCKKTYSSKDRYLDLTVTAGLRDYTEIQPARTELFRSPLVSFLYERGWRQNFRQSGFPGPDEEFKMAQEYFESAEGGLLVDVSCGSGLFSRKFAKSGTYSGVIALDFSENMLRQCYDFIEKDDTLSTNNIALVRADVSRLPFSSGSVDAVHAGAALHCWPSPSNAVAEITRTLKNGGVFVGSTFLRYSSKTPWFLRPFRERTPQGYGYLTEEEIKDLCTSCGLTNYSSKIQQAFIMFTAQKP*

>Glyma09g12390.2   sequence type=predicted peptide   gene model=Glyma09g12390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCKRCKKTYSSKDRYLDLTVTAGLRDYTEIQPARTELFRSPLVSFLYERGWRQNFRQSGFPGPDEEFKMAQEYFESAEGGLLVDVSCGSGLFSRKFAKSGTYSGVIALDFSENMLRQCYDFIEKDDTLSTNNIALVRADVSRLPFSSGSVDAVHAGAALHCWPSPSNAVAEITRTLKNGGVFVGSTFLRYSSKTPWFLRPFRERTPQGYGYLTEEEIKDLCTSCGLTNYSSKIQQAFIMFTAQKP*

>Glyma09g12390.3   sequence type=predicted peptide   gene model=Glyma09g12390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATSVLSPPFFHPLHQLQFSKCPRLSSKSHFRPRLLRSISQRTIRAISAVAAESELGTQQDHAIEADIFACPVCYEPLIRKGPSGLNLSGFMCKRCKKTYSSKDRYLDLTVTAGLRDYTEIQPARTELFRSPLVSFLYERGWRQNFRQSGFPGPDEEFKMAQEYFESAEGGLLVDVSCGSGLFSRKFAKSGTYSGVIALDFSENMLRQCYDFIEKDDTLSTNNIALVRADVSRLPFSSGSVDAVHAGAALHCWPSPSNAVAEITRTLKNGGVFVGSTFLRYSSKTPWFLRPFRERTPQGYGYLTEEEIKDLCTSCGLTNYSSKIQQAFIMFTAQKP*

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