Glyma09g12380 - SoyBase

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Report for Sequence Feature Glyma09g12380

Feature Type:	gene_model
Chromosome:	Gm09
Start:	13024733
stop:	13029844
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g12380

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G19250	AT	Annotation by Michelle Graham. TAIR10: flavin-dependent monooxygenase 1 \| chr1:6650656-6653053 REVERSE LENGTH=530	SoyBase	E_val: 8.00E-139	ISS
GO:0009626	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0009627	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance	SoyBase	N/A	ISS
GO:0009870	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response signaling pathway, resistance gene-dependent	SoyBase	N/A	ISS
GO:0010204	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response signaling pathway, resistance gene-independent	SoyBase	N/A	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0050832	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus	SoyBase	N/A	ISS
GO:0051707	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to other organism	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0071456	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to hypoxia	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0031227	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intrinsic to endoplasmic reticulum membrane	SoyBase	N/A	ISS
GO:0004497	GO-mf	Annotation by Michelle Graham. GO Molecular Function: monooxygenase activity	SoyBase	N/A	ISS
GO:0004499	GO-mf	Annotation by Michelle Graham. GO Molecular Function: N,N-dimethylaniline monooxygenase activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0050660	GO-mf	Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding	SoyBase	N/A	ISS
GO:0050661	GO-mf	Annotation by Michelle Graham. GO Molecular Function: NADP binding	SoyBase	N/A	ISS
KOG1399	KOG	Flavin-containing monooxygenase	JGI		ISS
PTHR23023	Panther	DIMETHYLANILINE MONOOXYGENASE	JGI		ISS
PTHR23023:SF18	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00743	PFAM	Flavin-binding monooxygenase-like	JGI		ISS
UniRef100_B9T603	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Dimethylaniline monooxygenase, putative n=1 Tax=Ricinus communis RepID=B9T603_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233B2F7	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233B2F7 related cluster n=1 Tax=unknown RepID=UPI000233B2F7	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g12380

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g12380

Paralog	Evidence	Comments
Glyma15g23966	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g12380 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g093800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g12380

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g12380

Limit To All Plant Sequences

>Glyma09g12380.2   sequence type=CDS   gene model=Glyma09g12380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAGAAGGGTTGCAATTATTGGGGCAGGAACAAGTGGCCTGGTTGCCTGCAAATACCTTATAGAGTTTGGATTTAATCCAATTGTCTTTGAAGTTGATGATGGTGTTGGAGGACTATGGAGACATACCATAGAGTCCACCAAGCTCCAAAATACTAAACAAACGTACCAGTTTATAGATTTTCCATGGCCTTCTTCAGTTAAAGAAGATAATCCAAGTCACAACCAAGTGCTAGATTATCTTAAATCCTATGCTGAACATTTTTCCCTCATTTCTTACATTAGATTCAACTCCAAAGTAATCAATATAGATTATGTTGGAGAGTCTAGTGAAGAAATGAAATCATGGGAATTGTGGGGTTGTAATGGCAGGCCCTTTTGCTCCAAGGGAACCTGGCATATTGTTGTGCAAGATACCAAGAATTTATCCATAGAGGTGCACAAGGCTGACTTTGTCATTCTTTGCATTGGGAAATATAGTGGTTTTCCAAACATTCCTGAATTCCCACCAGGAAAAGGCCCAGAAGTTTTTAATGGCAGGGTCATGCACTCCATGGACTACTCAAATTTGGACAATGAGACTGCTGCTGAATTCATCAAAAGAAAAAAGATTACAATAATAGGCTCACAGAAATCTGGTCTTGATCTAGCAGCTGAATGTGCAAATGTAAATGGAGTCATGTATCCTTGCACAATTATTCAAAGGACCGCACACTGGATTCTTCCAGATTTTGACCTTTGGGGTGTTATTGTTGGATTCTTTTTCTTAAATCGCTTTGCGGAGCTTTTAATTCACAAGCCAGGAGAACCCTTCCTACTTGGCCTTGTGGCCACTTTACTTTCACCACTGAGATGGGGAATTTCTAAATTTGTTGAAACTATTCTAAAATGGAAGCTGCCATTAAAGAAGTATGGATTGGTACCTAATCACAGCTTTCTTCAAGATCTCTCCACATGTCTGCTTGGGGTGTTTCCTGATAACTTCTTTGACAAGCTAAAAGAAGGATCCATTCTTATGAAGAAATCGCAAAGCTTTAGCTTTTGTAGAGAAGGTGTAATCATTGATGGAGAAGCTAAGCCCCTAGAAACAAATATAGTAATTTTTGCCACTGGATACAAAGGTGACCAAAAAATCAAAAACATATTCAAATCTCCAATCTTTCAAAATTACATCATTGGGCCAGCAACCTCAACACTTCCTCTCTACAGACAAATAATTCACCCTCGAATCCCACAGTTGGCAATGGTAGGATATGCCGAGGGCATATCAAATATTTTTGCCTCAGAAATGAAAAGCTTGTGGCTGGTGCATTTCTTGGATGGAAACATAGAGTTGCCTAGTATAAGAGAGATGGAAAAGGACGTGAAATTGTGGGAAGACAATATGAAGCAATATGGTGGAAAATATTATTCGAAATCATGCATTGCTAATTGTGGCATATGGTATCATGATCAATTGTGCAAAGACATGAAGCGTAACCCCAGAAGAAAGAAAGGCCTTTTTGCGGAGTTGTTTGAACCATATGGCCACGCTGATTACATGGATCTTACTCGCAAATGA

Predicted protein sequences of Glyma09g12380

Limit To All Plant Sequences

>Glyma09g12380.2   sequence type=predicted peptide   gene model=Glyma09g12380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MERRVAIIGAGTSGLVACKYLIEFGFNPIVFEVDDGVGGLWRHTIESTKLQNTKQTYQFIDFPWPSSVKEDNPSHNQVLDYLKSYAEHFSLISYIRFNSKVINIDYVGESSEEMKSWELWGCNGRPFCSKGTWHIVVQDTKNLSIEVHKADFVILCIGKYSGFPNIPEFPPGKGPEVFNGRVMHSMDYSNLDNETAAEFIKRKKITIIGSQKSGLDLAAECANVNGVMYPCTIIQRTAHWILPDFDLWGVIVGFFFLNRFAELLIHKPGEPFLLGLVATLLSPLRWGISKFVETILKWKLPLKKYGLVPNHSFLQDLSTCLLGVFPDNFFDKLKEGSILMKKSQSFSFCREGVIIDGEAKPLETNIVIFATGYKGDQKIKNIFKSPIFQNYIIGPATSTLPLYRQIIHPRIPQLAMVGYAEGISNIFASEMKSLWLVHFLDGNIELPSIREMEKDVKLWEDNMKQYGGKYYSKSCIANCGIWYHDQLCKDMKRNPRRKKGLFAELFEPYGHADYMDLTRK*

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