Glyma09g12180 - SoyBase

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Report for Sequence Feature Glyma09g12180

Feature Type:	gene_model
Chromosome:	Gm09
Start:	12628920
stop:	12631680
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g12180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G39630	AT	Annotation by Michelle Graham. TAIR10: unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr4:18397749-18399263 REVERSE LENGTH=233	SoyBase	E_val: 5.00E-53	ISS
GO:0000911	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation	SoyBase	N/A	ISS
GO:0006275	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of DNA replication	SoyBase	N/A	ISS
GO:0006346	GO-bp	Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0009957	GO-bp	Annotation by Michelle Graham. GO Biological Process: epidermal cell fate specification	SoyBase	N/A	ISS
GO:0010389	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of G2/M transition of mitotic cell cycle	SoyBase	N/A	ISS
GO:0016458	GO-bp	Annotation by Michelle Graham. GO Biological Process: gene silencing	SoyBase	N/A	ISS
GO:0031048	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA	SoyBase	N/A	ISS
GO:0034968	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone lysine methylation	SoyBase	N/A	ISS
GO:0051322	GO-bp	Annotation by Michelle Graham. GO Biological Process: anaphase	SoyBase	N/A	ISS
GO:0051567	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_UPI000233D4D3	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233D4D3 related cluster n=1 Tax=unknown RepID=UPI000233D4D3	SoyBase	E_val: 1.00E-160	ISS

Expression Patterns of Glyma09g12180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g12180

Paralog	Evidence	Comments
Glyma15g23780	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g12180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g092600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g12180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g12180

Limit To All Plant Sequences

>Glyma09g12180.3   sequence type=transcript   gene model=Glyma09g12180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGAGTTCAATTGAACTTCGGTGCAGCGATGCAGCGACAAATCGACGCGATCAGGGCGGTTCGCGACGTCGAGATCGAGCACCTGCTCACGGAGCTGCGGTTCCTGCGCTCGCGGTTCGACGGCGAGGAGCTCCGGAAGCCCGTGCTGCATGTTTTCGAAGAAACCCTACCGAATCTCGCCGTCGTCGTGAACGGCGAGTGCAACAAGAATCTGGAAGTGAAATGGAGAGAGACGGAAGGGTGTAACGATGGTGTGAATTTGCACGCTTCTTTGCTCCAAAGGCTGTCCATCGCTTCCATCCCTCGCTTCCCTGGGTTTGAATATTCTACCAATGAAGGGAGAATGAGCTTTATTGGTGCTGATGACCTGCATTTCAAGGACATTGCTTTGGAGGAACCATCTGACACTCAGACTCTAGCAGTGCAAGAAGGTCTTCAGACTCCCGGTGTGACTAGTCAGAGGTTGTCAGTTGGGATGACACCCAAAACACTTAGGCTGCCCAAACCTGGCGAGATGCTTCTCTCTGTGCATGGATCACCTCTAGGTGTTTACAAGGATAATAACATGGAAGCCATACATGAGTCAGAGGAGGGTTGAAGCCATCTAAATCCACTGTCCTCCAAGAAGCTCTACAAATCTTTACGTGCGCACCGAGCAATACCATTTGTCATCACTCTAGATGAGGGTTACTTGAAAATTAATGGCCCCTTGTTATTCTTCATTTTTCACTTAGCATTGAAGACTTTCAGATTTTCCCATGACAGTCAATTAGATGATATTGGCCTTCATACTTCTGCAAAATTTTGGAATGGATGATGCTGAAAGAATTCTACAGATTTGTGTGACTACTGTAGTACTTTGTAAATTTTTTTCTAATTGTATGGTTAATTTGCATTACCAGAATGATAAGGTTCTAAAAACTCTTTTGCACTGTAATTTTATAATCAAGCAATAAGATTTTTTGAGATTATCCTTTTACCAGCAAAAAACATTCATGAGATTCTATTTGGCTTGAACCCCAATGTGAATGACAAACTTCAAATCTGGA

Coding sequences of Glyma09g12180

Limit To All Plant Sequences

>Glyma09g12180.2   sequence type=CDS   gene model=Glyma09g12180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTCAATTCACAAATCTGCAAGTTTGGGTGAACAACGAGACCGTTGAGTTGAGTTTGAGTCCCTTCGCATTCAATTATTCATTCACAGTTTTTCATCTTCCGAAACCTAAAATGCCAAAGCGTGGTAGAACCAAGAAAACCGCGAAAGCAACCGAATCAGTAACCGAACCTCAATCTCAAACGCAGGCACCACAATTCATCGACCTCGAAATCCAAGCGATGCAGCGACAAATCGACGCGATCAGGGCGGTTCGCGACGTCGAGATCGAGCACCTGCTCACGGAGCTGCGGTTCCTGCGCTCGCGGTTCGACGGCGAGGAGCTCCGGAAGCCCGTGCTGCATGTTTTCGAAGAAACCCTACCGAATCTCGCCGTCGTCGTGAACGGCGAGTGCAACAAGAATCTGGAAGTGAAATGGAGAGAGACGGAAGGGTGTAACGATGGTGTGAATTTGCACGCTTCTTTGCTCCAAAGGCTGTCCATCGCTTCCATCCCTCGCTTCCCTGGGTTTGAATATTCTACCAATGAAGGGAGAATGAGCTTTATTGGTGCTGATGACCTGCATTTCAAGGACATTGCTTTGGAGGAACCATCTGACACTCAGACTCTAGCAGTGCAAGAAGGTCTTCAGACTCCCGGTGTGACTAGTCAGAGGTTGTCAGTTGGGATGACACCCAAAACACTTAGGCTGCCCAAACCTGGCGAGATGCTTCTCTCTGTGCATGGATCACCTCTAGGTGTTTACAAGGATAATAACATGGAAGCCATACATGAGTCAGAGGAGGGTTGA

>Glyma09g12180.3   sequence type=CDS   gene model=Glyma09g12180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGCGACAAATCGACGCGATCAGGGCGGTTCGCGACGTCGAGATCGAGCACCTGCTCACGGAGCTGCGGTTCCTGCGCTCGCGGTTCGACGGCGAGGAGCTCCGGAAGCCCGTGCTGCATGTTTTCGAAGAAACCCTACCGAATCTCGCCGTCGTCGTGAACGGCGAGTGCAACAAGAATCTGGAAGTGAAATGGAGAGAGACGGAAGGGTGTAACGATGGTGTGAATTTGCACGCTTCTTTGCTCCAAAGGCTGTCCATCGCTTCCATCCCTCGCTTCCCTGGGTTTGAATATTCTACCAATGAAGGGAGAATGAGCTTTATTGGTGCTGATGACCTGCATTTCAAGGACATTGCTTTGGAGGAACCATCTGACACTCAGACTCTAGCAGTGCAAGAAGGTCTTCAGACTCCCGGTGTGACTAGTCAGAGGTTGTCAGTTGGGATGACACCCAAAACACTTAGGCTGCCCAAACCTGGCGAGATGCTTCTCTCTGTGCATGGATCACCTCTAGGTGTTTACAAGGATAATAACATGGAAGCCATACATGAGTCAGAGGAGGGTTGA

Predicted protein sequences of Glyma09g12180

Limit To All Plant Sequences

>Glyma09g12180.2   sequence type=predicted peptide   gene model=Glyma09g12180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TQFTNLQVWVNNETVELSLSPFAFNYSFTVFHLPKPKMPKRGRTKKTAKATESVTEPQSQTQAPQFIDLEIQAMQRQIDAIRAVRDVEIEHLLTELRFLRSRFDGEELRKPVLHVFEETLPNLAVVVNGECNKNLEVKWRETEGCNDGVNLHASLLQRLSIASIPRFPGFEYSTNEGRMSFIGADDLHFKDIALEEPSDTQTLAVQEGLQTPGVTSQRLSVGMTPKTLRLPKPGEMLLSVHGSPLGVYKDNNMEAIHESEEG*

>Glyma09g12180.3   sequence type=predicted peptide   gene model=Glyma09g12180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQRQIDAIRAVRDVEIEHLLTELRFLRSRFDGEELRKPVLHVFEETLPNLAVVVNGECNKNLEVKWRETEGCNDGVNLHASLLQRLSIASIPRFPGFEYSTNEGRMSFIGADDLHFKDIALEEPSDTQTLAVQEGLQTPGVTSQRLSVGMTPKTLRLPKPGEMLLSVHGSPLGVYKDNNMEAIHESEEG*

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