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Report for Sequence Feature Glyma09g12132

Feature Type:gene_model
Chromosome:Gm09
Start:12576177
stop:12576662
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g12132
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G12030AT Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF506) | chr1:4064751-4066319 REVERSE LENGTH=295 SoyBaseE_val: 3.00E-33ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF04720PFAM Protein of unknown function (DUF506) JGI ISS
UniRef100_I1MFM7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MFM7_SOYBN SoyBaseE_val: 3.00E-95ISS
UniRef100_O48807UniRef Annotation by Michelle Graham. Most informative UniRef hit: F2401.16 n=1 Tax=Arabidopsis thaliana RepID=O48807_ARATH SoyBaseE_val: 4.00E-25ISS

Expression Patterns of Glyma09g12132
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g12132 not represented in the dataset
Glyma09g12132 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma09g12132 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g092300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g12132
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g12132
>Glyma09g12132.1   sequence type=CDS   gene model=Glyma09g12132   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGTGATTATGAGTACATTGATGTCAATTTTAAGGGAAAACGCTACATAGTTGAAGTCTCCCTTGCTGGGAAGTTCGAAATAGCTCGTCCCACATATCAATATTCTTCCTTGGTAGATGTTTTCCCATTGATATTTGTGGGTAAAGTTGTAAGGCTGATGTGCACTGCTCTTAAGGGATCCATGAAAAGAATGAACCTGCATATACCACCATGGAGGAGAAATATGTACATGCAAGCCAAGTGGTTAAGTGCTTACAAGCATACAACCAATGCAGTTGCAACTAAAAGGGCATCATTGTCATTGTCTTCTAATGAGTCTTTGTTTCCTAAAAGGTCCATGGGATTTGAAGTGCGACCTGTGAAAGCACATAATTGCAAGGATGTTTATGCCATTAATACTGGGTTCAGAATCGGCCATTGGACAGTTGTGCTTAATTCAGATAACCTTGGTGCATAA
Predicted protein sequences of Glyma09g12132
>Glyma09g12132.1   sequence type=predicted peptide   gene model=Glyma09g12132   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GDYEYIDVNFKGKRYIVEVSLAGKFEIARPTYQYSSLVDVFPLIFVGKVVRLMCTALKGSMKRMNLHIPPWRRNMYMQAKWLSAYKHTTNAVATKRASLSLSSNESLFPKRSMGFEVRPVKAHNCKDVYAINTGFRIGHWTVVLNSDNLGA*






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