SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research



Report for Sequence Feature Glyma09g11870

Feature Type:gene_model
Chromosome:Gm09
Start:12206054
stop:12210312
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G12300AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF667 (InterPro:IPR007714); Has 373 Blast hits to 371 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 213; Fungi - 4; Plants - 71; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink). | chr3:3921787-3923092 REVERSE LENGTH= SoyBaseE_val: 1.00E-128ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG3213 KOG Transcription factor IIB JGI ISS
PTHR12458Panther ORF PROTEIN JGI ISS
PF05018PFAM Protein of unknown function (DUF667) JGI ISS
UniRef100_B6T7P6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Gene trap locus 3 n=1 Tax=Zea mays RepID=B6T7P6_MAIZE SoyBaseE_val: 7.00E-128ISS
UniRef100_I1L273UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L273_SOYBN SoyBaseE_val: 2.00E-138ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma13g26120 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g090300 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma09g11870.4   sequence type=CDS   gene model=Glyma09g11870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCAAGAACACATTCCAATCTGGATTTCTTTCCATTTTATACAGCCTTGGGAGTAAACCTTTGCAGATATGGGACAAAGAAGTTGTTGATGGCCACATTAAACGACTACAGGATGAAGACATACAGTCCAATGTACTAGAAATAATTGGATCAAATATTCAGTCCACATACATTACTTGCCCAGCTGACCCAGCGACAACGCTTGGTATAAAGCTTCCATTCTTGGTTATTATTGTCAAGAATCTAAAGAAGTATTTCACATTTGAGATTCAAGTTTTGGATGATAAGAATGTCAGACGACGATTTCGAGCTTCAAATTTTCAAGCTGTCACTCGAGTAAAGCCCTACATTTGCACTATGCCACTGAGAATGGATGAGGGATGGAATCAAATCCAGTTTAACCTGGTTGATTTCACCAAGAGAGCTTATGGTACTAATTATGTGGAGACACTGCGAGTACAGGTCCATGCAAACTGTCGCCTGAGAAGGATATACTTCTCTGATCGCCTGTACTCTGAGGAGGAACTCCCACCGGAGTTTAAATTGTACCTTCCGATGCAGAAATCATGA

>Glyma09g11870.4   sequence type=predicted peptide   gene model=Glyma09g11870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFKNTFQSGFLSILYSLGSKPLQIWDKEVVDGHIKRLQDEDIQSNVLEIIGSNIQSTYITCPADPATTLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAVTRVKPYICTMPLRMDEGWNQIQFNLVDFTKRAYGTNYVETLRVQVHANCRLRRIYFSDRLYSEEELPPEFKLYLPMQKS*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo