Report for Sequence Feature Glyma09g11870
Feature Type: gene_model
Chromosome: Gm09
Start: 12206054
stop: 12210312
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma09g11870
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G12300 AT
Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF667 (InterPro:IPR007714); Has 373 Blast hits to 371 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 213; Fungi - 4; Plants - 71; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink). | chr3:3921787-3923092 REVERSE LENGTH=
SoyBase E_val: 1.00E-128 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG3213
KOG
Transcription factor IIB
JGI ISS
PTHR12458 Panther
ORF PROTEIN
JGI ISS
PF05018 PFAM
Protein of unknown function (DUF667)
JGI ISS
UniRef100_B6T7P6 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Gene trap locus 3 n=1 Tax=Zea mays RepID=B6T7P6_MAIZE
SoyBase E_val: 7.00E-128 ISS
UniRef100_I1L273 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L273_SOYBN
SoyBase E_val: 2.00E-138 ISS
Expression Patterns of Glyma09g11870
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma09g11870
Paralog Evidence Comments
Glyma13g26120 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma09g11870 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.09g090300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma09g11870
Coding sequences of Glyma09g11870
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma09g11870.4 sequence type=CDS gene model=Glyma09g11870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTTCAAGAACACATTCCAATCTGGATTTCTTTCCATTTTATACAGCCTTGGGAGTAAACCTTTGCAGATATGGGACAAAGAAGTTGTTGATGGCCACATTAAACGACTACAGGATGAAGACATACAGTCCAATGTACTAGAAATAATTGGATCAAATATTCAGTCCACATACATTACTTGCCCAGCTGACCCAGCGACAACGCTTGGTATAAAGCTTCCATTCTTGGTTATTATTGTCAAGAATCTAAAGAAGTATTTCACATTTGAGATTCAAGTTTTGGATGATAAGAATGTCAGACGACGATTTCGAGCTTCAAATTTTCAAGCTGTCACTCGAGTAAAGCCCTACATTTGCACTATGCCACTGAGAATGGATGAGGGATGGAATCAAATCCAGTTTAACCTGGTTGATTTCACCAAGAGAGCTTATGGTACTAATTATGTGGAGACACTGCGAGTACAGGTCCATGCAAACTGTCGCCTGAGAAGGATATACTTCTCTGATCGCCTGTACTCTGAGGAGGAACTCCCACCGGAGTTTAAATTGTACCTTCCGATGCAGAAATCATGA
Predicted protein sequences of Glyma09g11870
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma09g11870.4 sequence type=predicted peptide gene model=Glyma09g11870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MFKNTFQSGFLSILYSLGSKPLQIWDKEVVDGHIKRLQDEDIQSNVLEIIGSNIQSTYITCPADPATTLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAVTRVKPYICTMPLRMDEGWNQIQFNLVDFTKRAYGTNYVETLRVQVHANCRLRRIYFSDRLYSEEELPPEFKLYLPMQKS*