Glyma09g11835 - SoyBase

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Report for Sequence Feature Glyma09g11835

Feature Type:	gene_model
Chromosome:	Gm09
Start:	12125884
stop:	12127190
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g11835

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
ATCG00340	AT	Annotation by Michelle Graham. TAIR10: Photosystem I, PsaA/PsaB protein \| chrC:37375-39579 REVERSE LENGTH=734	SoyBase	E_val: 6.00E-99	ISS
GO:0006091	GO-bp	Annotation by Michelle Graham. GO Biological Process: generation of precursor metabolites and energy	SoyBase	N/A	ISS
GO:0006354	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, elongation	SoyBase	N/A	ISS
GO:0009768	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis, light harvesting in photosystem I	SoyBase	N/A	ISS
GO:0015979	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis	SoyBase	N/A	ISS
GO:0019684	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009522	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: photosystem I	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0009538	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: photosystem I reaction center	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0010287	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastoglobule	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0016168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: chlorophyll binding	SoyBase	N/A	ISS
PF00223	PFAM	Photosystem I psaA/psaB protein	JGI		ISS
UniRef100_Q6U135	UniRef	Annotation by Michelle Graham. Best UniRef hit: PsaB (Fragment) n=1 Tax=Pauridia longituba RepID=Q6U135_9ASPA	SoyBase	E_val: 4.00E-100	ISS
UniRef100_Q6U135	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: PsaB (Fragment) n=1 Tax=Pauridia longituba RepID=Q6U135_9ASPA	SoyBase	E_val: 4.00E-100	ISS

Expression Patterns of Glyma09g11835

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g11835 not represented in the dataset	Glyma09g11835 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma09g11835 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g090100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g11835

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g11835

Limit To All Plant Sequences

>Glyma09g11835.1   sequence type=CDS   gene model=Glyma09g11835   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCAGTGGATTTCATCCAGACTTAACACTTCTATCTTTCTTGTTGTGGTTGTCTATTGCATTTATTTTTCTAGTTGCTGGCCATATGTATAGAACCAACTTCGGGATTGGTCACAGTATAAAAGATCTTTTAGAAGCACATACTCCTCCGGGGGGTAGATTGGGGCGTGGACATAAGGGTCTTTATGACACAATCAATAATTCAATTCATTTTCAATTAGGTCTTGCTCTAGCCTCTTTAGGGGTTATTACTTCCTTGGTAGCTCAACACATGTACTCTTTACCCGCTTATGCATTTATAGCGCAAGACTTTACTACTCAAGTTGCATTATATACTCATCATCAATATATAGCGGGCTTCATTATGACAGGGCCCTTTGCTCATGGAGCTATATTTTTTATTAGAGATTATAATCCAGAACAAAATGAAGATAATGTCTTAGCAAGAATGTTAGACCATAAAGAAGCTATCATATCCCACTTAAGTTGGGCTAGCCTCTTTCTGGGGTTCCATAAACGACCGAAGCAACATCAAATCCCTAGGGCCTTCTCCAAATAG

Predicted protein sequences of Glyma09g11835

Limit To All Plant Sequences

>Glyma09g11835.1   sequence type=predicted peptide   gene model=Glyma09g11835   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
LSGFHPDLTLLSFLLWLSIAFIFLVAGHMYRTNFGIGHSIKDLLEAHTPPGGRLGRGHKGLYDTINNSIHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQVALYTHHQYIAGFIMTGPFAHGAIFFIRDYNPEQNEDNVLARMLDHKEAIISHLSWASLFLGFHKRPKQHQIPRAFSK*

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