SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G29400 | AT | Annotation by Michelle Graham. TAIR10: MEI2-like protein 5 | chr1:10290393-10293696 REVERSE LENGTH=800 | SoyBase | E_val: 0 | ISS |
| GO:0006635 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation | SoyBase | N/A | ISS |
| GO:0016558 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix | SoyBase | N/A | ISS |
| GO:0045836 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of meiosis | SoyBase | N/A | ISS |
| GO:0045927 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of growth | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| KOG4660 | KOG | Protein Mei2, essential for commitment to meiosis, and related proteins | JGI | ISS | |
| PTHR24011 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24011:SF200 | Panther | JGI | ISS | ||
| PF00076 | PFAM | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | JGI | ISS | |
| PF04059 | PFAM | RNA recognition motif 2 | JGI | ISS | |
| UniRef100_Q6J738 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: AML5 n=2 Tax=Medicago truncatula RepID=Q6J738_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233B185 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233B185 related cluster n=1 Tax=unknown RepID=UPI000233B185 | SoyBase | E_val: 0 | ISS |
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Glyma09g11630 not represented in the dataset |
Glyma09g11630 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g23420 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g088700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g11630.2 sequence type=CDS gene model=Glyma09g11630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGGCAGTCTTTTGATCCTTCATCTTTGGGTCCTTCCAAGATTCCATCTATAAAAATACCTGGAAAAGCAGGGAATGGTGCATGGGAGGCTTTGTCTGGATCTGATTCCTACCATGCTTCGTCGGATGCTAGCCTCTTTTCTAGCTCATTACCTGTTCTTCCGCATGAAAAATTGAACTTGAATGAAACTGCAAATGCTTATCAATCTATTGACGACATCTCATCCGGCTTTAAGAAGCTCCATCAAGATGCTGAGGGCAATGGTTCACTTGAAGACGGTGATACTCATGCAATTGGACCTGCCCTTCCTGATGATGAGGAGGAGCTTTTAGCTGGCATAATGGATGATTTTGACTTAAGTGGTTTGCCTGGTTCTCTTGAGGACTTAGAAGAGTATGATCTTTTTGGTTGTGGTGGAGGTATGGAACTAGAAACTGATCCACAGGAAAGTCTCACTGTGGGTATATCTAAGCTAAGCTTTGCAGATAGTACCGTTGGCAGTGTTTTGCCCCCTTATTCTTTTCCCAATGGTGTGGGAGCTGTTGCGGGAGAACATCCATATGGAGAGCATCCTTCTCGAACATTATTTGTTCGGAATATTAACAGTAATGTGGAGGATTCAGAGCTGAGAGCCCTTTTTGAGCAATATGGTGATATTAGAACCCTATACACTGCATGCAAACATCGGGGATTTGTAATGATATCCTATTATGATATCCGTGCTGCTCGAACAGCTATGCGTTCATTACAGAACAAACCTCTACGGCGCAGGAAACTAGACATTCATTTCTCAATACCAAAGGACAATCCATCAGACAAGGATATCAACCAGGGAACATTGGTAGTTTTCAATTTGGATCCATCTGTTTCAAATGAAGACCTGCGTCAAATATTTGGGGCTTATGGAGAGGTCAAAGAGATAAGGGAAACTCCTCACAAGAGGCATCACAAGTTTATTGAATTCTATGATGTCAGAGCAGCCGAAGCAGCACTTAAATCATTAAACAGGAGTGACATAGCTGGTAAACGCATAAAGCTTGAACCTAGTCGACCTGGAGGAGCTCGTAGAAATTTGATGCTCCAATTAAATCAAGAGCTTGACCAAGAAGAATCTCGGAGTTTCCGATACCAAGTGAGTTCACCTGTAGCTAACTCTCCCCCAGGTAACTGGTTACAGTTCAACAGCCCTGTTGAGCAGAATTCAATGCAAACTATCAATCATTCTCCTGGTTCTAGGATCATAAGCCCAACAACAGGCAATCATTTACCTGGATTAGCTTCAATTTTGCAACCACAAGTATCTAACGCTGTAAAGGCTGCTGCTATTGGCAATGACTTGGGAAGGAGCAGTCAAGGAGAGCACATATTTTCCGGTATGAATTCATCACACGGAGCTACTTTTCAGTCGCATTCACTTCCAGAGCCTAAATTCAGCCAATATCGTGGAGCATTGTCCTCAATTGGTCCATCAACATCAAATGGATCCTCAGTGGAAACTTTGTCTGGGCCACAGTTTCTATGGGGAAGCCCAACTCTCTACTCAGAGCATACCAAACCTTCAGTTTGGCCAAGATCATCTGTGGGGCATCCGTTTGCTGCATCCAATGGAAAGAGCCATGCCTTCCCATATTCAACTCAGAATAGTTCTTTTGTTGGTTCATCCCAGCATCATCACCACCATCATGTCGGCTCTGCCCCATCAGGTTTGCCTTTTGAGAGGCACTTTGGTTTCCATCCTGAGTCATCTGAAACTTCATTCATGAATAATGTTGGCTATGGAGGCATTGGTCTTGGGCATAATGATGGAAATTACATGGTTAATGCGGGTGGATCTGTTAATCCTAACACTACTATCCCAAGAAATATATCTGATAATGGTTCATCAAACTTAAGAATGAGATCTTCTCCAAGGCTTAGCCCTGTCTTTTTGGGAAATGGTCCTTATCCAGGACTGCCACCTACCACTTTGGAGAGTTTGGCTGACCGTGCTCGGAGTAGATGGATAGAGAACAATGGGAGCCAAGTTGATAGCAAGAAGCAATTTCAGCTCGATTTGGATAAGATTAGAAGTGGTGAAGATACAAGGACTACATTAATGATAAAGAATATCCCAAACAAATACACCTCAAAAATGTTATTAGCTGCCATTGATGAAAATCATAGGGGTGCTTATGATTTTCTCTATCTGCCAATTGACTTTAAGAAAAAATGCAATGTGGGCTATGCATTTATCAACATGCTGTCACCCTTTCTTATTATTCCATTCTATGAGACATTCAATGGGAAGAAATGGGAGAAATTTAATAGTGAAAAAGTTGCATCTTTGGCATATGCTCGAATTCAAGGAAAATCTGCCCTTGTGAGCCACTTCCAAAATTCAAGTTTGATGAATGAAGATAAACGATGTCGCCCTATTCTCTTCCACTCAGAGGGTTCTGAAGTTGGTGATCTGATTGTACAAGAGCACCTTTCTTCCAACTCCAACAATCTAAACATTCAGGCACCTAGGCCAAGTGAATTCTATTCAAGTGATTTTGCTGGGAGTCCTCCAAAGGCGGGCCCTTCTGCAAGCTTGGATACAAATTAA
>Glyma09g11630.2 sequence type=predicted peptide gene model=Glyma09g11630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRQSFDPSSLGPSKIPSIKIPGKAGNGAWEALSGSDSYHASSDASLFSSSLPVLPHEKLNLNETANAYQSIDDISSGFKKLHQDAEGNGSLEDGDTHAIGPALPDDEEELLAGIMDDFDLSGLPGSLEDLEEYDLFGCGGGMELETDPQESLTVGISKLSFADSTVGSVLPPYSFPNGVGAVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRSLQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQELDQEESRSFRYQVSSPVANSPPGNWLQFNSPVEQNSMQTINHSPGSRIISPTTGNHLPGLASILQPQVSNAVKAAAIGNDLGRSSQGEHIFSGMNSSHGATFQSHSLPEPKFSQYRGALSSIGPSTSNGSSVETLSGPQFLWGSPTLYSEHTKPSVWPRSSVGHPFAASNGKSHAFPYSTQNSSFVGSSQHHHHHHVGSAPSGLPFERHFGFHPESSETSFMNNVGYGGIGLGHNDGNYMVNAGGSVNPNTTIPRNISDNGSSNLRMRSSPRLSPVFLGNGPYPGLPPTTLESLADRARSRWIENNGSQVDSKKQFQLDLDKIRSGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGAYDFLYLPIDFKKKCNVGYAFINMLSPFLIIPFYETFNGKKWEKFNSEKVASLAYARIQGKSALVSHFQNSSLMNEDKRCRPILFHSEGSEVGDLIVQEHLSSNSNNLNIQAPRPSEFYSSDFAGSPPKAGPSASLDTN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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