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Report for Sequence Feature Glyma09g11600

Feature Type:gene_model
Chromosome:Gm09
Start:11733417
stop:11739940
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g11600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G18130AT Annotation by Michelle Graham. TAIR10: phytochrome E | chr4:10042312-10045948 REVERSE LENGTH=1112 SoyBaseE_val: 0ISS
GO:0006346GO-bp Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0009584GO-bp Annotation by Michelle Graham. GO Biological Process: detection of visible light SoyBaseN/AISS
GO:0009585GO-bp Annotation by Michelle Graham. GO Biological Process: red, far-red light phototransduction SoyBaseN/AISS
GO:0010155GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of proton transport SoyBaseN/AISS
GO:0016246GO-bp Annotation by Michelle Graham. GO Biological Process: RNA interference SoyBaseN/AISS
GO:0017006GO-bp Annotation by Michelle Graham. GO Biological Process: protein-tetrapyrrole linkage SoyBaseN/AISS
GO:0018106GO-bp Annotation by Michelle Graham. GO Biological Process: peptidyl-histidine phosphorylation SoyBaseN/AISS
GO:0018298GO-bp Annotation by Michelle Graham. GO Biological Process: protein-chromophore linkage SoyBaseN/AISS
GO:0046777GO-bp Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0000155GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphorelay sensor kinase activity SoyBaseN/AISS
GO:0004673GO-mf Annotation by Michelle Graham. GO Molecular Function: protein histidine kinase activity SoyBaseN/AISS
GO:0004871GO-mf Annotation by Michelle Graham. GO Molecular Function: signal transducer activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0008020GO-mf Annotation by Michelle Graham. GO Molecular Function: G-protein coupled photoreceptor activity SoyBaseN/AISS
GO:0009881GO-mf Annotation by Michelle Graham. GO Molecular Function: photoreceptor activity SoyBaseN/AISS
GO:0042803GO-mf Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity SoyBaseN/AISS
PTHR24423Panther TWO COMPONENT SIGNAL TRANSDUCTION PROTEIN-RELATED JGI ISS
PF00360PFAM Phytochrome region JGI ISS
PF00512PFAM His Kinase A (phosphoacceptor) domain JGI ISS
PF00989PFAM PAS fold JGI ISS
PF01590PFAM GAF domain JGI ISS
PF02518PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JGI ISS
PF08446PFAM PAS fold JGI ISS
UniRef100_I1L257UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L257_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q2HRN2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Phytochrome n=1 Tax=Medicago truncatula RepID=Q2HRN2_MEDTR SoyBaseE_val: 0ISS

Expression Patterns of Glyma09g11600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g11600
ParalogEvidenceComments
Glyma15g23400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g11600 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g088500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g11600
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g11600
>Glyma09g11600.1   sequence type=CDS   gene model=Glyma09g11600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTTTGGAAGTAGAGGGAAGCTGAAAGACACAAGCTTGAGCACATCAGCTGAAAGCAACATGAACAGCAAGAGGGACAAGATACTGGCTCAGTACAGTGCAGATGCTGAGATTCTGGCTGAGTTTGAGCAGTCTGGTGTGTCTGGCAAATCATTTGACTACTCAAGGATGGTTCTTGATCCTCCCAGGTTAGTGTCTGAGCAGAAAATGACTGCATATTTGTCCAAAATCCAAAGGGGTGGCCTTATCCAACCCTTTGGATGTATGCTTGCAATTGAGGAATCCACTTTTAGGATCATTGGGTTCAGTGATAATTGTTTTCAATTGTTGGGTTTGGAGAGGCAAATTGACTCTAAGCAGTTCATGGGTCTGATTGGGGTTGATGCCACAACCCTTTTCACTCCCCCTTCTGGGGCTTCCCTTGCAAAAGCTGCGGCTTCAAGGGAAATTTCGCTTTTGAACCCTATTTGGGTCTATGCTAGGACAACCCAGAAGCCATTTTATGCCATACTGCATAGGATTGATGTTGGGGTTGTGATTGATTTGGAGCCTGCACGGATGAGTGATCCGGCATTGTCACTTGCTGGGGCTGTTCAGTCACAGAAGCTGGCTGTTAGGGCTATTTCAAGGCTGCAATCTCTTCCCGGGGAAGATATTGGTCTTTTGTGTGACACTGTTGTTGAGGAAGTGCAGAAGCTTACTGGATATGATAGGGTTATGGTATATAAGTTTCATGAGGATGACCATGGTGAGGTTGTATCTGAGATTAGGAGGTCAGATTTGGAGCCTTACTTGGGTTTGCATTATCCGGCCACGGATATCCCTCAAGCTTCTCGGTTCTTGTTCAAGCAAAACCGGGTCAGGATGATTTGTGATTGCCATGCAAAGCCGGTTAAGGTCATTCAAAGTGAAGAATTAAGGCAACCTCTTTGCTTGGTGAACTCAACCCTAAGGTTACCTCATGGTTGTCACACTCAGTACATGGCTAACATGGGCTCAATTGCCTCTCTGGTGATGGCAATTGTAGTCAATGGAAAGCATGCAACAAGGCTTTGGGGTTTGCTAGTTTGTCATCACACTTCACCACGCTACGTGTCTTTCCCGGTTCGCTATGCTTGTGAGTTCCTAATGCAGGCTTTTGGACTGCAGCTTTACATGGAGATTCAATTGGCATCACAAATGGCAGAGAAGAGAATTCTTAAAACACAAACCTTACTGTGTGACATGCTCCTTCGTGATGCACCGTTAGGCATTGTGAATCAATCCCCAAGTATCATGGACCTTGTGAAGTGTGATGGGGCTGCCTTGTATTATGAAGGAAACTGTTGGCTGTTAGGCACAACCCCAACTGAGGCACAGGTGAAAGACATTGCAGAATGGCTACTTAGTAATCATGGGGACTCAACAGGTTTGACTACGGATAGTTTGGCTGATGCTGGTTATCCAGGCGCTGCTTCGCTGGGCGATGCAGTTTGTGGCATGGCCACAGCAAGAATCAATTCAAAACATTTCTTGTTCTGGTTCAGGTCTCACACTGCTAAGGAAGTGAAATGGGGAGGAGCCAAGCACCATCCAGAGGATAAGGATGATGGAGGAAAAATGAACCCGAGATCATCGTTTAAAGCTTTTCTTGAAGTGGTCAAAAGCAAAAGTTTGCCTTGGGAAGTGCCGGAAATCAATGCTATTCACTCATTGCAACTAATAATAAGAGATTCATTCCAAGACACGGAGAACACTGGTCCAAAGACTTTAACTTATGTACAGAAAAGTGACACTGCAACTGGAGGGATGGATGAACTCAGTTCAGTAGCACTTGAAATGGTGAGGTTAATTGAGACAGCAACAGTCCCAATTTTTGGGGTTGATTTAGGTGGCGTAATCAACGGATGGAATACAAAAATTGCTGAATTGACAGGTCTACAGGCCAGTGAAGCTATGGGAAAATCCCTGGTAAATGAAATTATACATGCGGACTCATGTGACACTTTTAAAAGTACTCTAAGCAGAGCCTTGCAAGGCCAGGAGGACAAAAATGTTGAGTTGAAAATAAAACACTTTGGGCTTGATCAACAACAGGAAGTTGCATACCTCGTGGTCAATGCTTGCACTAGTAGGGACCACACTGATGCTATTGTTGGGGTATGCTTTGTAGGTCAAGACATCACTTGTGAGAAAGTGGTTCAAGATAAATTCATCCAGTTGGAAGGTGATTACAAAGCAATCATACAGAGTCTCAGTCCACTGATTCCACCCATATTTTCTTCCGATGAGAATGCCTGTTGCTCTGAATGGAATGCAGCCATGGAAAGGCTAACTGGTTGGAAAAGAGATGAAGTCATAGGGAAATTGCTTCCTGGTGAAATTTTTGGAAGTTTTTGTCGACTAAAAGGTCAAGATACACTGACTAATTTTATGATTTTACTATACCGTGGAATAAGTGGTCAAGATTCTGAGAAGATACCATTTGGATTTTTTGATAGAAATGGAGAATTCATAGAGACTTATATAACAGCAAACAAGAGAATTGATACTGGTGGGAATATGCTTGGCTGTTTCTGCTTCTTGCAGATTGTAATGCCTGACCTAAATCAACCCTCTGAAGAGCATAAGCCTAGAGGCAGGGAAAGCATTTCTGAATCTAAAGAGTTGGCATATATACTGCAAGAGATGAAGAAACCTTTAAATGGTATACGATTCACTCGCAAACTTTTGGAAAATACAGCTGTCTCAGAAAACCAAAAACAATTTCTTGACACTAGTGATGCATGTGAAAGACAAATCTTGGCAATCATTGAGGATACAAACTTAGGAAGTATTAATGAAGGCACTTTGCAGCTAAATATGGAAGAATTTGTTCTGGGAAATATTTTAGATGCCATTGTCAGTCAAGTCATGATGTTGATAAGAGAAAAGAACTTGCAACTGTTTCATGAAATTCCTGATGAAATAAAAATGCTTTCTCTATATGGTGACCAAATTAGGCTTCAGGTGGTCTTGTCTGATTTTTTGCTTAATGTAGTCAGCCATACAGCATCTCCAAATGGCTGGGTAGAAATCAAGATTTCACCTGGTTTAACGCTACAGGATGGCAATGAGTTTATCCATCTAAAGTTCAGTATGGCACATTCTGGTCAAGGTATTCCTTCCAATGTTCTTCACGATATGTTTGAAGGGGGGAATCAATGGACTACGCAGGAAGGTCTAGGACTATATATGTCCAGGAAAATCCTCAGTAGGATAAGTGGTCATGTCCAGTACGTAAGGGAACAAAATAAGTGCTATTTTCTCATTGATCTTGAAATTAGAAAAAGAAAAGAAAGGAAAAGGAACTTGCATGCAGAGACAAGCATGTTAAGTTAG
Predicted protein sequences of Glyma09g11600
>Glyma09g11600.1   sequence type=predicted peptide   gene model=Glyma09g11600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSFGSRGKLKDTSLSTSAESNMNSKRDKILAQYSADAEILAEFEQSGVSGKSFDYSRMVLDPPRLVSEQKMTAYLSKIQRGGLIQPFGCMLAIEESTFRIIGFSDNCFQLLGLERQIDSKQFMGLIGVDATTLFTPPSGASLAKAAASREISLLNPIWVYARTTQKPFYAILHRIDVGVVIDLEPARMSDPALSLAGAVQSQKLAVRAISRLQSLPGEDIGLLCDTVVEEVQKLTGYDRVMVYKFHEDDHGEVVSEIRRSDLEPYLGLHYPATDIPQASRFLFKQNRVRMICDCHAKPVKVIQSEELRQPLCLVNSTLRLPHGCHTQYMANMGSIASLVMAIVVNGKHATRLWGLLVCHHTSPRYVSFPVRYACEFLMQAFGLQLYMEIQLASQMAEKRILKTQTLLCDMLLRDAPLGIVNQSPSIMDLVKCDGAALYYEGNCWLLGTTPTEAQVKDIAEWLLSNHGDSTGLTTDSLADAGYPGAASLGDAVCGMATARINSKHFLFWFRSHTAKEVKWGGAKHHPEDKDDGGKMNPRSSFKAFLEVVKSKSLPWEVPEINAIHSLQLIIRDSFQDTENTGPKTLTYVQKSDTATGGMDELSSVALEMVRLIETATVPIFGVDLGGVINGWNTKIAELTGLQASEAMGKSLVNEIIHADSCDTFKSTLSRALQGQEDKNVELKIKHFGLDQQQEVAYLVVNACTSRDHTDAIVGVCFVGQDITCEKVVQDKFIQLEGDYKAIIQSLSPLIPPIFSSDENACCSEWNAAMERLTGWKRDEVIGKLLPGEIFGSFCRLKGQDTLTNFMILLYRGISGQDSEKIPFGFFDRNGEFIETYITANKRIDTGGNMLGCFCFLQIVMPDLNQPSEEHKPRGRESISESKELAYILQEMKKPLNGIRFTRKLLENTAVSENQKQFLDTSDACERQILAIIEDTNLGSINEGTLQLNMEEFVLGNILDAIVSQVMMLIREKNLQLFHEIPDEIKMLSLYGDQIRLQVVLSDFLLNVVSHTASPNGWVEIKISPGLTLQDGNEFIHLKFSMAHSGQGIPSNVLHDMFEGGNQWTTQEGLGLYMSRKILSRISGHVQYVREQNKCYFLIDLEIRKRKERKRNLHAETSMLS*






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