SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G39260 | AT | Annotation by Michelle Graham. TAIR10: binding;RNA binding | chr2:16392288-16399588 REVERSE LENGTH=1181 | SoyBase | E_val: 0 | ISS |
| GO:0000956 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process | SoyBase | N/A | ISS |
| GO:0006396 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA processing | SoyBase | N/A | ISS |
| GO:0006412 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translation | SoyBase | N/A | ISS |
| GO:0009630 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gravitropism | SoyBase | N/A | ISS |
| GO:0016070 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA metabolic process | SoyBase | N/A | ISS |
| GO:0019344 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process | SoyBase | N/A | ISS |
| GO:0022402 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell cycle process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| KOG2051 | KOG | Nonsense-mediated mRNA decay 2 protein | JGI | ISS | |
| PTHR12839 | Panther | NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 (UP-FRAMESHIFT SUPPRESSOR 2) | JGI | ISS | |
| PF02854 | PFAM | MIF4G domain | JGI | ISS | |
| PF04050 | PFAM | Up-frameshift suppressor 2 | JGI | ISS | |
| UniRef100_I1L252 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L252_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q2HSQ9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Initiation factor eIF-4 gamma, middle; Up-frameshift suppressor 2 n=1 Tax=Medicago truncatula RepID=Q2HSQ9_MEDTR | SoyBase | E_val: 0 | ISS |
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Glyma09g11480 not represented in the dataset |
Glyma09g11480 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g22750 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g087900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g11480.1 sequence type=CDS gene model=Glyma09g11480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATCACCAAGAGGATGAAAGTAACAGCAAACAAGACGATGAGGAAGCTGTTGCTCGCCTTGAGGAAATAAAAAAATCCATTGAGGCGAAGCTGGCTTTACGGCAAAGCAATTTGAATCCAGAAAGGCCTGACTCAGGATTTTTAAGGACATTGGATTCTAGCATTAAGCGCAACACTGCTGTTATTAAGAAACTGAAGCAGATTAATGAAGAACAGCGTGAAGCTCTGATGGACGAGTTGCGAAGTGTCAACTTAAGCAAATTTGTCAGTGAAGCCGTGGCTGCTATATGTGATGCCAAGCTTAGAAGTTCTGATATACAAGCTGCAGTTCAGATCTGTTCTTTGCTTCATCAAAGGTACAAGGACTTTGCACCAAGCCTGGTTCAAGGGCTTCTGAAAGTCTTCTCTCCTGGAAAACCTGGTGATGAATCAGATACAGACAGAAATTTGAAGGCAATGAAGAAGCGCAGCTCTCTAAAGCTTCTACTGGAACTCTTTTTTGTTGGAGTTATTGAAGATGGTGGCATTTTTATCAATATCATAAAAGATCTTACCAGTGGGGAACAGCTAAAAGATCGGGATGCTGCACAAACAAGTTTGACCCTTCTTTCGAGTTTTGCTCGCCAAGGGAGAATTTTTCTTGGACTTTCTGTTAGTGGGCCGGAAATTCATGAAGAGTTTTTTAAAGGCCTTAACATCACAGCAGATCAGAAGAAAGTTTTACGGAAAGCATGCTATTCCTTTTATGATGCTGCAGCTGAATTACTTCAGTCTGAGCATTCTTCACTTCGCTTAATGGAGCATGAAAATTCTAAGATTTTGAATGCAAAAGGAGAGCTCAGTGATGAAAATATTGCTTCATATGAAAAGCTTCGTAAATCCTATGACCATTTGTACCGTAACATCTCATCATTAGCAGAAGCACTTGATATGCAGCCTCCTGTAATGCCAGAGGATGGCCACACAACTAGGGTTACCAGTGGTGAGGACGGTATTTCTTCTGCTTCTGGTAAAGATTCTTCTGTTGTTGAACCCATATGGGATGATGAAGATGCAAGGACTTTCTATGAATGTTTACCTGATCTTAGAGCTTTTGTTCCTGCTGTGCTTTTGGGAGAAACAGAGCCTAAAAGCAGTGAACAATCTGCGAAGAATCAAGACCAAACAACTGAAATATTACCTGAATCAGACAAAGGTCAACAGACCACCCATGAAAGTGGAGAGGTCTCTACAGAGTCTAGTGCTTTGCCAGAGGCAGAAAGCACAGAAAGAGTGAAGGATAAGGAGGAAAAAGACAAGTCTAAAGAATTGGACAGAGAGAAGGAAAAAGAAAAAGAAAATGACAAAAAGGGAGAAAATGAAAAAGACAAACTCAGAAGTGTTGAAGGGACAAATTTGGATGCTCTACTGCAGAGGCTTCCGGGTTGTGTGAGCCGGGACCTTATTGATCAATTGACTGTGGAGTTCTGTTATCTAAATTCAAAATCAAGTCGGAAAAAGCTTGTGAGGGCTTTGTTCAATGTACCAAGGACATCTCTGGAATTGTTACCATATTATTCACGCATGGTTGCCACTCTCTCAACTTGTATGAAGGATGTCTCGTCCATTCTTTTGCAGATGTTGGAGGAGGAATTCAACTTCTTAATAAATAAAAAGGATCAGATGAACATTGAGACAAAGATAAGGAACATCAGGTTCATTGGAGAACTTTGCAAGTTCAAAATTTCCCCTCCTGGCCTAGTCTTCAGTTGTTTGAAGGCCTGTTTAGATGATTTTACACACCACAACATTGATGTAGCTTGCAATCTTCTTGAAACATGTGGCCGTTTTCTGTATCGGTCTCCAGAAACTACTATACGTATGGCTAACATGTTGGAGATACTGATGCGGTTGAAAAATGTAAAAAACTTGGATCCGAGACATAGCACTTTGGTGGAGAATGCATACTACCTTTGCAAGCCACCAGAAAGATCTGCACGAGTAGCTAAAGTTCGTCCTCCATTGCATCAGTATATCAGAAAATTACTTTTCTCTGATCTTGATAAGTCTACCATTGAGCATGTGCTGAGGCAACTCCGTAAGTTACCTTGGAATGAATGTGAACCATATCTTTTGAAATGCTTCATGAAGGTCTACAAAGGAAAATATGGTCAGATCCACCTGATTGCATCTCTTGCTGCTGGATTAAGTCGCTATCATGATGAGTTTGCTGTAGCTATCGTTGATGAGGTACTGGAGGAGATTAGAGTTGGGCTGGAGTTAAATGACTATGGGATGCAGCAAAGACGCATTGCTTACATGCGATTCTTGGGGGAGCTTTACAACTATGAGCATGTAGACTCATCTGTTATTTTTGAGACACTATATCTCATTCTCATCTATGGCCATGGGACACAAGAGCAAGATGTACTGGATCCACCTGAAGATTGTTTTCGCATAAGGTTGATCATTACTCTGCTTGAAACTTGTGGGCATTACTTTGATCGTGGCTCTTCTAAGAGGAAACTTGATCGATTCCTAATACACTTCCAGAGGTATATTTTAAGCAAAGGGGCACTGCCTCTGGACATCGAATTTGACTTACAGGATCTGTTTGTGGACTTGCGTCCCAATATGGTTCGTCACAATTCTATTGAGGAAGTGAATGCAGCTCTCGTAGAACTCGAGGAACATGATCGAATTGTTTTTGCTGATAAGGCCAGTAGTGAAAAACATTCTGACACTGAGAAGTCTTTAAGTAGGACCACTTCCACTACTACAGTGGTTGGCAATGGACAAAGCATTGATAATGGTATGGAAGAAAATGGAGTGCAAGATGATAATGACAGTGAGACTGATTCAGGGAGTGACACAATTGATGTTGAGGGACATGATGATGAAGAGTTGGATGAGGAGAATCATGATGATGGGTGTGAAACTGAGGATGATGACGACGACGACGATGATGGGCCTGGACCTGCTTCTGACGAGGAGGATGAAGTCCATGTGAGACAAAAAATGACCCAGGTGGACCCTCTGGAAGAAGCCAATTTTGATCAGGAGCTCAAGGCTGTAGTACAGGAGAGTATGGAACAGCGAAGGCAGGAGCTACGAGGTCGTCCTACATTGAACATGATGATTCCAATGAATGTATTTGAGGGATCTGCCAAGGATCACCATGGGAGGGGAGTTGGTGGGGAAAGTGGTGATGAGCCCCTGGATGAGGATACTGGAGGAAACAAAGAGGTTCAGGTGAGAGTTCTTGTGAAGCGTGGAAACAAGCAGCAAACAAAGCAGATGTTCATCCCACGGAATTCCTCACTGGTGCAGAGTACAAAACAGAAAGAAGCAGCAGAGCTTCAAGAGAAAGAAGACATCAAGAGGCTTGTCTTGGAGTATAATGACAGAGAAGAAGAGGAGCTTAATGGATTAGGGACCCAGGCAACAAACTGGATGCAGAGTGTAGGTTACAAGGGTGGTGGCCGTGGCAGCAGTTTGGAAGGAAACAGTGGCAGGGGTAGTGGATCAAGACATCGGCATCATAATTATTCTGGCAGTGGAATCTATTACAGTAGAAGAAAGTGA
>Glyma09g11480.1 sequence type=predicted peptide gene model=Glyma09g11480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDHQEDESNSKQDDEEAVARLEEIKKSIEAKLALRQSNLNPERPDSGFLRTLDSSIKRNTAVIKKLKQINEEQREALMDELRSVNLSKFVSEAVAAICDAKLRSSDIQAAVQICSLLHQRYKDFAPSLVQGLLKVFSPGKPGDESDTDRNLKAMKKRSSLKLLLELFFVGVIEDGGIFINIIKDLTSGEQLKDRDAAQTSLTLLSSFARQGRIFLGLSVSGPEIHEEFFKGLNITADQKKVLRKACYSFYDAAAELLQSEHSSLRLMEHENSKILNAKGELSDENIASYEKLRKSYDHLYRNISSLAEALDMQPPVMPEDGHTTRVTSGEDGISSASGKDSSVVEPIWDDEDARTFYECLPDLRAFVPAVLLGETEPKSSEQSAKNQDQTTEILPESDKGQQTTHESGEVSTESSALPEAESTERVKDKEEKDKSKELDREKEKEKENDKKGENEKDKLRSVEGTNLDALLQRLPGCVSRDLIDQLTVEFCYLNSKSSRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVSSILLQMLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFKISPPGLVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERSARVAKVRPPLHQYIRKLLFSDLDKSTIEHVLRQLRKLPWNECEPYLLKCFMKVYKGKYGQIHLIASLAAGLSRYHDEFAVAIVDEVLEEIRVGLELNDYGMQQRRIAYMRFLGELYNYEHVDSSVIFETLYLILIYGHGTQEQDVLDPPEDCFRIRLIITLLETCGHYFDRGSSKRKLDRFLIHFQRYILSKGALPLDIEFDLQDLFVDLRPNMVRHNSIEEVNAALVELEEHDRIVFADKASSEKHSDTEKSLSRTTSTTTVVGNGQSIDNGMEENGVQDDNDSETDSGSDTIDVEGHDDEELDEENHDDGCETEDDDDDDDDGPGPASDEEDEVHVRQKMTQVDPLEEANFDQELKAVVQESMEQRRQELRGRPTLNMMIPMNVFEGSAKDHHGRGVGGESGDEPLDEDTGGNKEVQVRVLVKRGNKQQTKQMFIPRNSSLVQSTKQKEAAELQEKEDIKRLVLEYNDREEEELNGLGTQATNWMQSVGYKGGGRGSSLEGNSGRGSGSRHRHHNYSGSGIYYSRRK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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