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Report for Sequence Feature Glyma09g10985

Feature Type:gene_model
Chromosome:Gm09
Start:11173175
stop:11174465
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g10985
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G20500AT Annotation by Michelle Graham. TAIR10: AMP-dependent synthetase and ligase family protein | chr1:7100502-7102847 REVERSE LENGTH=550 SoyBaseE_val: 3.00E-18ISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0009698GO-bp Annotation by Michelle Graham. GO Biological Process: phenylpropanoid metabolic process SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0016207GO-mf Annotation by Michelle Graham. GO Molecular Function: 4-coumarate-CoA ligase activity SoyBaseN/AISS
PTHR24096Panther FAMILY NOT NAMED JGI ISS
PTHR24096:SF43Panther SUBFAMILY NOT NAMED JGI ISS
UniRef100_G8A1G9UniRef Annotation by Michelle Graham. Most informative UniRef hit: 4-coumarate-CoA ligase-like protein n=1 Tax=Medicago truncatula RepID=G8A1G9_MEDTR SoyBaseE_val: 5.00E-27ISS
UniRef100_I1LCM7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LCM7_SOYBN SoyBaseE_val: 4.00E-32ISS

Expression Patterns of Glyma09g10985
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g10985 not represented in the dataset
Glyma09g10985 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma09g10985 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g087100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g10985
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma09g10985
>Glyma09g10985.2   sequence type=transcript   gene model=Glyma09g10985   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTTTCTCATGTCGTAACAAAGATATGTTTGCAGGGTTGAAGATGAAGAAATTGGACAAATGCCAATGGCATATGTGGTGAGAGCAGCTGGTTCTGAACTCTCAGAAAACCAAGTCATTCAATTTGTTGCAGGCCAGGTGGCTCCATACAACAAAGTGAGAAAGATGAGTTTCATTGACACTATTCCAAAGTTAGCTGCTGGCAAGATATTGCAGAAGGATCTTGTTTCTCAAAGAAAATATCAACTTGTCTCCAAGTTATGACTAGCATGTATAAATGGTGGTATTAGTATTCCAAGTTATGACTCAATGTCCTAATTTGTGGGTAGCAGATGTTACTGAGGTTCTTTGTGAGCTACAACTTACTATAAAGAAAGTGAAGGTATCTACTACACCTCATGGCAAAGTCATAGATCTGTTTTTCATCACAGAGACCAGATAGGCTGTCAGTAACGTAAAAGTAATCCCTGTGGCCCAGCCATGGCTGCACCATTTTTCTCAATGCCCTTTTAGCCTTATGTTTATCAGG
Coding sequences of Glyma09g10985
>Glyma09g10985.1   sequence type=CDS   gene model=Glyma09g10985   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAATGGCATATGTGGTGAGAGCAGCTGGTTCTGAACTCTCAGAAAACCAAGTCATTCAATTTGTTGCAGGCCAGGTGGCTCCATACAACAAAGTGAGAAAGATGAGTTTCATTGACACTATTCCAAAGTTAGCTGCTGGCAAGATATTGCAGAAGGATCTTGTTTCTCAAAGAAAATATCAACTTGTCTCCAAGTTATGA

>Glyma09g10985.2   sequence type=CDS   gene model=Glyma09g10985   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAATGGCATATGTGGTGAGAGCAGCTGGTTCTGAACTCTCAGAAAACCAAGTCATTCAATTTGTTGCAGGCCAGGTGGCTCCATACAACAAAGTGAGAAAGATGAGTTTCATTGACACTATTCCAAAGTTAGCTGCTGGCAAGATATTGCAGAAGGATCTTGTTTCTCAAAGAAAATATCAACTTGTCTCCAAGTTATGA
Predicted protein sequences of Glyma09g10985
>Glyma09g10985.1   sequence type=predicted peptide   gene model=Glyma09g10985   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPMAYVVRAAGSELSENQVIQFVAGQVAPYNKVRKMSFIDTIPKLAAGKILQKDLVSQRKYQLVSKL*

>Glyma09g10985.2   sequence type=predicted peptide   gene model=Glyma09g10985   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPMAYVVRAAGSELSENQVIQFVAGQVAPYNKVRKMSFIDTIPKLAAGKILQKDLVSQRKYQLVSKL*






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