SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G38960 | AT | Annotation by Michelle Graham. TAIR10: endoplasmic reticulum oxidoreductins 2 | chr2:16265455-16267883 FORWARD LENGTH=472 | SoyBase | E_val: 0 | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0005789 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum membrane | SoyBase | N/A | ISS |
| GO:0003756 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein disulfide isomerase activity | SoyBase | N/A | ISS |
| GO:0016671 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | SoyBase | N/A | ISS |
| GO:0050660 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding | SoyBase | N/A | ISS |
| KOG2608 | KOG | Endoplasmic reticulum membrane-associated oxidoreductin involved in disulfide bond formation | JGI | ISS | |
| PTHR12613 | Panther | ERO1-RELATED | JGI | ISS | |
| PF04137 | PFAM | Endoplasmic Reticulum Oxidoreductin 1 (ERO1) | JGI | ISS | |
| UniRef100_G7IGL6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Endoplasmic oxidoreductin-1 n=1 Tax=Medicago truncatula RepID=G7IGL6_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1L244 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L244_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma09g10830 not represented in the dataset |
Glyma09g10830 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g23150 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g086800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g10830.4 sequence type=transcript gene model=Glyma09g10830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GAGGTGTCTTGGAAAATGTCATTGGGATCTCTTGAAGTTTCTTAGAAAAACTGTTTGGCACAAGGGGGAAAAAAAACAGAAACCATCAACCGCCCATAATTTTCCCTCATTAAATTCTCCACAACCTTGACCTTTGGCTGCTAAACAGAAGAACGAAAAAAGAAAAAAGAAAAAAGAAAAAAGACACGCAGCGCACAAGTTAAAACCTTCTCAAACTCTCTTTCGTCAAAACGCGTCCATTGGATCCATCAACGCACGCCAAACATCTCGTCTTTTCGCGTTTCCGTTGGTGGTTTTTCGTTTTCCTCAGTGTTCCTTCAGTGATTTTCTTCTGGGTCTGTGAAAAGCTCGGTGCTTTGTTTCGGAAGCACCGACATTGGGGAACTGTGTGATGGTGAAAGCGGAGATTGAGAAAAAGGGTTGCAGCACAAGACGATGGCTTTGGCTTGTGATGGCTCTCGTCGCCGTGTTTGTTGCCATGGCCATGTCTTCCAGAACCTCTCCAAAAGCTCTGTTTGGAGCCATTGATAGAGCTTGTCCGTGTGCTCGGGGCACACCGAAGTACAGTGGCATGGTGGAAGATTGTTGTTGTGATTATGAGACCGTGGATCGTCTTAATGAAGAAGTGTTGCACCCCTCCCTCCAGGAGCTCGTGAAGACCCCTTTCTTTCGATATTTTAAGGTGAAGTTATGGTGTGACTGCCCTTTCTGGCCTGATGATGGCATGTGCCGGTTGCGGGACTGTAGTGTGTGTGAATGCCCTGAAAGCGAGTTCCCCGAATCATTTAAGAAGCCTGACCATCGCCTTTCAATGACTGATCTTGTTTGTCAAGAAGGAAAACCTCAGGCAGCTGTTGACCGTACTTTAGACAGTAAAGCTTTCAGAGGATGGACAGAAATAGACAATCCATGGACAAATGACGATGAGACTGACAATGATGAGATGACATACGTGAATCTTCAACTGAATCCCGAAAGATATACTGGTTATACTGGTCCATCAGCAAGAAGGATATGGGATGCTGTCTACTCAGAGAACTGCCCCAAATATCCATCTCAAGAGTTATGCCATGAGGAAAAGATTTTGTATAAATTGATATCCGGTCTTCACTCCTCCATATCAATTCACATAGCTTCTGATTATCTACTTGATGAAGCCACAAATTTGTGGGGCCAAAATCTTACTTTGATGTATGATCGAGTCCTAAGATACCCTGATCGTGTCAGAAATTTGTATTTCACTTTTCTCTTTGTTCTGCGAGCAGTAACCAAAGCTTCAGATTATCTGGAACAGGCAGAGTATGATACCGGTAACCCCAATGAGGACCTTACGACACAATCCTTGATAAAACAGCTACTTTACAACCCCAAGCTTCAAGCTGCATGTCCAATTCCGTTTGATGAAGCTAATTTGTGGAAAGGCCAAAGTGGACCTGAGCTAAAACAGAAAATTCAACAACAATTCAGAAACATCAGTGCAATGATGGATTGTGTAGGATGTGAGAAATGTCGATTATGGGGCAAACTTCAGGTTCTTGGTCTCGGAACTGCATTAAAGATTCTCTTCTCTGTTGATGGTCAAGAAAACTCGAGTCATACACTGCAGCTGCAAAGGAATGAGGTAATTGCATTGACGAACCTTCTCAATCGACTCTCAGAATCTGTCAAATTCGTCCAAGAAATGGGACCTACAGCTGAAAGAATCATGGAAGGAGGACATTTTTCTGCTCATACAAGAACATTGATTAGCTCATGGAAAAAAATTTGGTCCTATGTATCTAAAACTTAGGTAACATGCTCTTTTCTCAGTATTTGTTGTTTACTCGTTTGTTGTACCAAACTGAGTATTACATGTTTCCAATCTGCAGGCTATAATTGGTGACAGTTCTGTTTTTAATTATTCAAATTACTAGAGAGACTAGACATAGGAAAACCACCGTCGTGGTTTGGAAATTTTCTGAGGGATGTGAAACAAATGTACTTAGAATGTCTCAAAATTAAAAATAAACACAAGGAGAAAATTTACTGAGAGTAATAGAAGATATATTTTTACTTGGGAATGAGATGTAATCCCCTTATCCCCACTAATTTTGTTGAACAGTTTTTTTTGTACAATTTTTTTTTTTTGTAATTCAATTAGCACACTCCTTTCCCCTTGCTTGACTGTTAAAACAGATAAGCTTGAAAACAAAAATTGTTCTTTTTTTTTCTTATAAAATTGAGTGGATGAAGCTAGAGGCGGGAAAGGAAATCTCAACTAGGTTGGCACTCCCAAGGAAACCGCTACCCAGCTACACTCCCCACTACTAGTAGTATATTGAAAATAGAACAAAAGGAGAAGTAGAACAAAGTTGGGGGCCCAAAATTCAACTAGAAAATCAATAAAACCATTTTCCATAGTTAGAATTAGATTTGATGTGGGGTGCCTGACTCATATTACAGCATGGGTGAGAGTTGCAAGTTCAATATTTTTTTTTGAGTTTTAAAGATTCAATATAAATACTTCTTTACTGTTAACTAATATGTAATTATCCATTAAAAAAACTAATATGTAATTTAGGCCACCAAAAAAAAAAATATGAAATTACCTTAAAATTAACTTTTTAAGTAATTAATGAAAAAAAAA
>Glyma09g10830.3 sequence type=CDS gene model=Glyma09g10830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGAAAGCGGAGATTGAGAAAAAGGGTTGCAGCACAAGACGATGGCTTTGGCTTGTGATGGCTCTCGTCGCCGTGTTTGTTGCCATGGCCATGTCTTCCAGAACCTCTCCAAAAGCTCTGTTTGGAGCCATTGATAGAGCTTGTCCGTGTGCTCGGGGCACACCGAAGTACAGTGGCATGGTGGAAGATTGTTGTTGTGATTATGAGACCGTGGATCGTCTTAATGAAGAAGTGTTGCACCCCTCCCTCCAGGAGCTCGTGAAGACCCCTTTCTTTCGATATTTTAAGGTGAAGTTATGGTGTGACTGCCCTTTCTGGCCTGATGATGGCATGTGCCGGTTGCGGGACTGTAGTGTGTGTGAATGCCCTGAAAGCGAGTTCCCCGAATCATTTAAGAAGCCTGACCATCGCCTTTCAATGACTGATCTTGTTTGTCAAGAAGGAAAACCTCAGGCAGCTGTTGACCGTACTTTAGACAGTAAAGCTTTCAGAGGATGGACAGAAATAGACAATCCATGGACAAATGACGATGAGACTGACAATGATGAGATGACATACGTGAATCTTCAACTGAATCCCGAAAGATATACTGGTTATACTGGTCCATCAGCAAGAAGGATATGGGATGCTGTCTACTCAGAGAACTGCCCCAAATATCCATCTCAAGAGTTATGCCATGAGGAAAAGATTTTGTATAAATTGATATCCGGTCTTCACTCCTCCATATCAATTCACATAGCTTCTGATTATCTACTTGATGAAGCCACAAATTTGTGGGGCCAAAATCTTACTTTGATGTATGATCGAGTCCTAAGATACCCTGATCGTGTCAGAAATTTGTATTTCACTTTTCTCTTTGTTCTGCGAGCAGTAACCAAAGCTTCAGATTATCTGGAACAGGCAGAGTATGATACCGGTAACCCCAATGAGGACCTTACGACACAATCCTTGATAAAACAGCTACTTTACAACCCCAAGCTTCAAGCTGCATGTCCAATTCCGTTTGATGAAGCTAATTTGTGGAAAGGCCAAAGTGGACCTGAGCTAAAACAGAAAATTCAACAACAATTCAGAAACATCAGTGCAATGATGGATTGTGTAGGATGTGAGAAATGTCGATTATGGGGCAAACTTCAGGTTCTTGGTCTCGGAACTGCATTAAAGATTCTCTTCTCTGTTGATGGTCAAGAAAACTCGAGTCATACACTGCAGCTGCAAAGGAATGAGGTAATTGCATTGACGAACCTTCTCAATCGACTCTCAGAATCTGTCAAATTCGTCCAAGAAATGGGACCTACAGCTGAAAGAATCATGGAAGGAGGACATTTTTCTGCTCATACAAGAACATTGATTAGCTCATGGAAAAAAATTTGGTCCTATGTATCTAAAACTTAG >Glyma09g10830.4 sequence type=CDS gene model=Glyma09g10830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGAAAGCGGAGATTGAGAAAAAGGGTTGCAGCACAAGACGATGGCTTTGGCTTGTGATGGCTCTCGTCGCCGTGTTTGTTGCCATGGCCATGTCTTCCAGAACCTCTCCAAAAGCTCTGTTTGGAGCCATTGATAGAGCTTGTCCGTGTGCTCGGGGCACACCGAAGTACAGTGGCATGGTGGAAGATTGTTGTTGTGATTATGAGACCGTGGATCGTCTTAATGAAGAAGTGTTGCACCCCTCCCTCCAGGAGCTCGTGAAGACCCCTTTCTTTCGATATTTTAAGGTGAAGTTATGGTGTGACTGCCCTTTCTGGCCTGATGATGGCATGTGCCGGTTGCGGGACTGTAGTGTGTGTGAATGCCCTGAAAGCGAGTTCCCCGAATCATTTAAGAAGCCTGACCATCGCCTTTCAATGACTGATCTTGTTTGTCAAGAAGGAAAACCTCAGGCAGCTGTTGACCGTACTTTAGACAGTAAAGCTTTCAGAGGATGGACAGAAATAGACAATCCATGGACAAATGACGATGAGACTGACAATGATGAGATGACATACGTGAATCTTCAACTGAATCCCGAAAGATATACTGGTTATACTGGTCCATCAGCAAGAAGGATATGGGATGCTGTCTACTCAGAGAACTGCCCCAAATATCCATCTCAAGAGTTATGCCATGAGGAAAAGATTTTGTATAAATTGATATCCGGTCTTCACTCCTCCATATCAATTCACATAGCTTCTGATTATCTACTTGATGAAGCCACAAATTTGTGGGGCCAAAATCTTACTTTGATGTATGATCGAGTCCTAAGATACCCTGATCGTGTCAGAAATTTGTATTTCACTTTTCTCTTTGTTCTGCGAGCAGTAACCAAAGCTTCAGATTATCTGGAACAGGCAGAGTATGATACCGGTAACCCCAATGAGGACCTTACGACACAATCCTTGATAAAACAGCTACTTTACAACCCCAAGCTTCAAGCTGCATGTCCAATTCCGTTTGATGAAGCTAATTTGTGGAAAGGCCAAAGTGGACCTGAGCTAAAACAGAAAATTCAACAACAATTCAGAAACATCAGTGCAATGATGGATTGTGTAGGATGTGAGAAATGTCGATTATGGGGCAAACTTCAGGTTCTTGGTCTCGGAACTGCATTAAAGATTCTCTTCTCTGTTGATGGTCAAGAAAACTCGAGTCATACACTGCAGCTGCAAAGGAATGAGGTAATTGCATTGACGAACCTTCTCAATCGACTCTCAGAATCTGTCAAATTCGTCCAAGAAATGGGACCTACAGCTGAAAGAATCATGGAAGGAGGACATTTTTCTGCTCATACAAGAACATTGATTAGCTCATGGAAAAAAATTTGGTCCTATGTATCTAAAACTTAG
>Glyma09g10830.3 sequence type=predicted peptide gene model=Glyma09g10830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVKAEIEKKGCSTRRWLWLVMALVAVFVAMAMSSRTSPKALFGAIDRACPCARGTPKYSGMVEDCCCDYETVDRLNEEVLHPSLQELVKTPFFRYFKVKLWCDCPFWPDDGMCRLRDCSVCECPESEFPESFKKPDHRLSMTDLVCQEGKPQAAVDRTLDSKAFRGWTEIDNPWTNDDETDNDEMTYVNLQLNPERYTGYTGPSARRIWDAVYSENCPKYPSQELCHEEKILYKLISGLHSSISIHIASDYLLDEATNLWGQNLTLMYDRVLRYPDRVRNLYFTFLFVLRAVTKASDYLEQAEYDTGNPNEDLTTQSLIKQLLYNPKLQAACPIPFDEANLWKGQSGPELKQKIQQQFRNISAMMDCVGCEKCRLWGKLQVLGLGTALKILFSVDGQENSSHTLQLQRNEVIALTNLLNRLSESVKFVQEMGPTAERIMEGGHFSAHTRTLISSWKKIWSYVSKT* >Glyma09g10830.4 sequence type=predicted peptide gene model=Glyma09g10830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVKAEIEKKGCSTRRWLWLVMALVAVFVAMAMSSRTSPKALFGAIDRACPCARGTPKYSGMVEDCCCDYETVDRLNEEVLHPSLQELVKTPFFRYFKVKLWCDCPFWPDDGMCRLRDCSVCECPESEFPESFKKPDHRLSMTDLVCQEGKPQAAVDRTLDSKAFRGWTEIDNPWTNDDETDNDEMTYVNLQLNPERYTGYTGPSARRIWDAVYSENCPKYPSQELCHEEKILYKLISGLHSSISIHIASDYLLDEATNLWGQNLTLMYDRVLRYPDRVRNLYFTFLFVLRAVTKASDYLEQAEYDTGNPNEDLTTQSLIKQLLYNPKLQAACPIPFDEANLWKGQSGPELKQKIQQQFRNISAMMDCVGCEKCRLWGKLQVLGLGTALKILFSVDGQENSSHTLQLQRNEVIALTNLLNRLSESVKFVQEMGPTAERIMEGGHFSAHTRTLISSWKKIWSYVSKT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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