Glyma09g10500 - SoyBase

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Report for Sequence Feature Glyma09g10500

Feature Type:	gene_model
Chromosome:	Gm09
Start:	10559919
stop:	10562760
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g10500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G43890	AT	Annotation by Michelle Graham. TAIR10: Pectin lyase-like superfamily protein \| chr2:18176924-18178390 FORWARD LENGTH=392	SoyBase	E_val: 6.00E-156	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0004650	GO-mf	Annotation by Michelle Graham. GO Molecular Function: polygalacturonase activity	SoyBase	N/A	ISS
PF00295	PFAM	Glycosyl hydrolases family 28	JGI		ISS
UniRef100_G7IIV0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Polygalacturonase n=1 Tax=Medicago truncatula RepID=G7IIV0_MEDTR	SoyBase	E_val: 7.00E-180	ISS
UniRef100_I1L233	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1L233_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g10500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g10500

Paralog	Evidence	Comments
Glyma15g23310	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g10500 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g085500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g10500

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g10500

Limit To All Plant Sequences

>Glyma09g10500.1   sequence type=CDS   gene model=Glyma09g10500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCATTATACACATCATTTTATCCTACTCTTTCTAGCCACCATCAGTTTTTTTTCATTTACTTTTTCTAAAGATGCTCCCTCTATCAATGTGCTTAGCTTTGGGGCTAAACCCAACGGCAACTTCGACTCTACCACATCCTTTGTTAAGGCATGGTCTTCGGCATGCAAATCAAAAGAACCAGCCACGTTTTACGTACCAAAAGGATTTTTTTTGTTAAAACAAGTGATATTTGAGGGTCCTTGCTCGAGCAATATCAAATTTCGAATTGCTGGCACTATTGTTGCCCCTTCAGATTATAGTTCCCTTGGTAATAAATCTGGATTTTGGATCATGTTCAGGAATCTTAATGGATTTTCAGTACAAGGTGGGACTTTTGATGGAAAGGGTGATAGCTATTGGCGTTGTAGAAAATCTGGATCGAGTTGTCCTGCTGGAGCAAGGTCCATAACTTTCAGTTCGTGCAACGATGTGAAGGTTAGAGGATTAACATCATTAAATAGCCAGTCAATGCACATTGCAGTGGAGCAATGCAAAAACATTTTGTTTAAAGATGTGAATATCAAAGCTCCTAGTACGAGCCCGAATACAGATGGAATCGATGTGACACTTTCAACGGGGGTTACTGTAATCGATGCCACCATACGCACCGGTGATGATTGCATAGCCTTAATCCAAGGTAGCACCAATGTGTGGATCGAGCGCGTCACTTGTGGCCCCGGACATGGCATTAGCATTGGGAGCTTGGGCACCTCTGAGGATGAGGCTGGAGTACAAAACGTGACAGTGATCAATTCAATCTTCGACGGAACACAAAATGGGGTTAGGATAAAATCGTGGGCAAAACCAAGCAATGGATACGCAAGTGACATTGTGTTCAGGAACCTCACCATGCTAAATGCCTACAACCCTATCATTATTGATCAAAAATATTGCCCCGGTGACAAGAATTGTCCTCAGCAGAATTCTGGGGTGAAGATAAGCAAAGTATCATATGAACATATAAGAGGAACTTCAGCATGCCCACAAGCAATAAATTTCGATTGCAGCAAAAGCAACCCATGTGAGGGCATCAAACTGCAAGACATAGACCTCGTTTATGACAATGGATCATCAACATCAACTTGTAAGAATGCTGATGGGATTACCCGCGGAGAAGTCATCCCAAAGAGTTGTCTTTGA

Predicted protein sequences of Glyma09g10500

Limit To All Plant Sequences

>Glyma09g10500.1   sequence type=predicted peptide   gene model=Glyma09g10500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAHYTHHFILLFLATISFFSFTFSKDAPSINVLSFGAKPNGNFDSTTSFVKAWSSACKSKEPATFYVPKGFFLLKQVIFEGPCSSNIKFRIAGTIVAPSDYSSLGNKSGFWIMFRNLNGFSVQGGTFDGKGDSYWRCRKSGSSCPAGARSITFSSCNDVKVRGLTSLNSQSMHIAVEQCKNILFKDVNIKAPSTSPNTDGIDVTLSTGVTVIDATIRTGDDCIALIQGSTNVWIERVTCGPGHGISIGSLGTSEDEAGVQNVTVINSIFDGTQNGVRIKSWAKPSNGYASDIVFRNLTMLNAYNPIIIDQKYCPGDKNCPQQNSGVKISKVSYEHIRGTSACPQAINFDCSKSNPCEGIKLQDIDLVYDNGSSTSTCKNADGITRGEVIPKSCL*

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