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Report for Sequence Feature Glyma09g10415

Feature Type:gene_model
Chromosome:Gm09
Start:10475335
stop:10508623
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g10415
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G30450AT Annotation by Michelle Graham. TAIR10: cation-chloride co-transporter 1 | chr1:10762905-10769061 FORWARD LENGTH=975 SoyBaseE_val: 0ISS
GO:0006810GO-bp Annotation by Michelle Graham. GO Biological Process: transport SoyBaseN/AISS
GO:0006811GO-bp Annotation by Michelle Graham. GO Biological Process: ion transport SoyBaseN/AISS
GO:0006812GO-bp Annotation by Michelle Graham. GO Biological Process: cation transport SoyBaseN/AISS
GO:0055085GO-bp Annotation by Michelle Graham. GO Biological Process: transmembrane transport SoyBaseN/AISS
GO:0005768GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endosome SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005802GO-cc Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0008511GO-mf Annotation by Michelle Graham. GO Molecular Function: sodium:potassium:chloride symporter activity SoyBaseN/AISS
GO:0015377GO-mf Annotation by Michelle Graham. GO Molecular Function: cation:chloride symporter activity SoyBaseN/AISS
KOG2082 KOG K+/Cl- cotransporter KCC1 and related transporters JGI ISS
PTHR11827Panther SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS JGI ISS
PTHR11827:SF19Panther JGI ISS
PF00324PFAM Amino acid permease JGI ISS
UniRef100_A4VCJ8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cation chloride cotransporter n=2 Tax=Medicago truncatula RepID=A4VCJ8_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233B17FUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233B17F related cluster n=1 Tax=unknown RepID=UPI000233B17F SoyBaseE_val: 0ISS

Expression Patterns of Glyma09g10415
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g10415 not represented in the dataset
Glyma09g10415 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g10415
ParalogEvidenceComments
Glyma15g22520 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g10415 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g085300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g10415
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g10415
>Glyma09g10415.1   sequence type=CDS   gene model=Glyma09g10415   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCGAGAAAATGGCGACGGCGACATTGAAGGCGGTGGTGGCGCCGACGACGGTGGTTTTCGCTCTCCGATTGGTCGCAAGTACCACCCTGTCTTGGCCAACGATCGCGCGGTGCTCGAAATGTCCTCCATGGATCAGGGACCTTCTTCTTCCTCTTCCGCATTTCCAGATCAGCATCCTAATATCAGAAAAGTAAATACAAGTGTGAATGGTAGTTCGGATGCTAAAGAAGAGAACCCTTCTCATGAAAACCAACCTAATGGATCCCTGCAGCAGGAATCTAAACTGGAATTGTTTGGTTTTGATTCTCTTGTCAACATTCTTGGTCTCAAAAGTATGACTGGTGAGCATGTTGCACAACCATCTAGTCCTAGAGATGGTGAGGATATTTCCATCACAGCTGGCTTGCCAAAGCCTGCTGCTCCTAAACTGGGTACGCTGATGGGTGTGTTTATTCCATGTTTACAAAGCATTTTGGGCATCATCTACTACATTCGTTTCTCTTGGATTGTTGGTATGGCTGGCATAGGAGAGACATTGCTGCTTGTTTCTTTATGTGGCACTTGTACATTCCTTACTTCAATATCATTGAGTGCTATTGCAACCAATGGAGCCATGAAGGGTGGGGGACCTTACTATCTCATAGGCCGTGCCCTTGGTCCTGAAGTTGGAGTTAGCATTGGTCTATGCTTTTTCCTGGGAAATGCTGTTGCCGGAGCACTTTATATATTGGGAGCTGTAGAAACATTTTTGAAAGCAGTTCCTTCTGCTGGGATTTTTAGAGAGACTATCACTCAAGTTAATGGTACTGCAATTGCACGACCAATACAGAGTCCAAGTTCACATGACCTGCAGATATATGGGATTGTTTTGACTATTCTGTTATGCTTTATTGTATTTGGAGGAGTGAAGATGATAAATCGGGTTGCACCTGCTTTTCTCATACCTGTTTTATTCTCAGTCGTCTGCATATTTTTGGGAATATTTTTGGCAGGGAAGGATCATCCTTCAGAGGGAATTACTGGGTTGAGTTCGGATACATTTAAAGAAAATTGGAGTTCAGATTATCAAAGGACTAACAATGCTGGAATTCCAGAAACTGATGGCTCGGTAACCTGGAATTTCAATTCATTGGTAGGCCTCTTTTTCCCTGCTGTAACGGGAATAATGGCAGGCTCTAATCGATCATCCTCTCTGAGAGATACTCAGCGATCAATTCCTGTTGGAACTTTAGCTGCAACTCTTACAACTACTTTTCTGTATCTTGTTTCTTTGATGTTATTTGGCGCTGTTGCCACCAGAGAGAAGCTTTTAACTGACAGGCTACTTACAGCTACAATTGCCTGGCCTTTTCCTTCATTAATTAAAATTGGAATTATTCTTTCAACTATGGGTGCTGCTCTTCAGAGCCTGACTGGTGCCCCACGTCTGCTTGCAGCAATAGCCAATGATGATATTTTACCTATTTTGAACTACTTTAAAGTTGGAGATGCCAGTGAACCACATGTTGCTACCTTTTTTACTGCTTTCTTATGCATTGGGTGTGTCGTTATTGGGAATCTGGATCTTATCACTCCAACTGTAACTATGTTTTTCCTTCTATGTTACACTGGTGTCAACTTATCCTGCTTCCTTCTCGATCTTCTAGATGCCCCTAGTTGGCGTCCTCGGTGGAAATTTCACCATTGGAGTCTGTCCCTTGTGGGAGCATTACTTTGCATAGTGATCATGTTCCTAATCTCTTGGTCATTCACTGTGGTGTCTTTGCTCCTTGCAAGCCTCATATATAAGTACGTGAGCATTCAAGGAAAGGCTGGGGACTGGGGAGATGGTTTCAAAAGTGCTTATTTCCAACTAGCACTTCGTAGCCTTCGGTCCCTAGGAGCAAGCCAAGTGCACCCGAAGAATTGGTATCCAATTCCACTTGTATTTTGCCGACCCTGGGGCAAACTGCCAGAAAATGTTCCCTGTCATCCCAAACTTGCAGATTTTGCTAACTGTATGAAGAAGAAAGGTCGAGGAATGTCCATATTTGTCTCTATACTAGATGGGGATTACCATGAATGTGCTGAAGATGCCAAGACTGCTTGCAAACAACTTAGCACCTACATAGATTACAAAAATTGTGAAGGTGTGGCTGAGATAGTTGTTGCCCCTAACATGTCTGAAGGCTTCCGTGGCATAATTCAGACAATGGGCCTTGGCAATCTCAAGCCGAACATTGTGGTGATGCGTTACCCAGAAATTTGGCGGAGGGAAAACTTGATAGAAATCCCTGCTACCTTTGTTGGGATAATTAATGATTGCATTGTTGCAAACAAGGCTGTGGTTATAGTTAAGGGTCTTGATGAGTGGCCAAATGAGTACCAGAGGCAGTATGGCACAATTGATTTGTATTGGATTGTAAGAGATGGTGGTCTCATGCTGCTTCTTTCTCAGCTCCTTCTTACCAAGGAGAGCTTTGAGAATTGCAAGATTCAGGTCTTTTGTATCGCAGAAGACGATGCAGATGCTGAGGGGCTGAAAGCTGATGTGAAAAAATTCCTTTACGATCTTCGGATGCAAGCGGAAGTCTTTGTCATAACAATGAAATGGGATGCACAGATGGATGGTGGTGGCGGGTCCCCGGCACAAGATGAGTCAATGGATGCATTTACTAGTGCTCAACAAAGAATTGATAATTACTTAACCCAAATGAAGGCGACAGCAGAGAGAGAAGGTACTCCTCTAATGGCAGATGGCAAGCCCGTGGTTGTGAATGAGAAGCAGGTTGAGAAGTTTCTTTATACGACGCTTAAGCTCAATTCGACAATTTTGAGATACTCGAGAATGGCTGCTGTTGTGTTGGTGAGTCTTCCTCCACCTCCAGTGAGCCACCCAGCATATTTCTATATGGAGTACATGGATCTGTTGCTGGAGAAAATACCAAGGATTTTGATTGTAAGAGGATATCGTAAAGACGTTGTAACTCTATTTACATAG
Predicted protein sequences of Glyma09g10415
>Glyma09g10415.1   sequence type=predicted peptide   gene model=Glyma09g10415   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDRENGDGDIEGGGGADDGGFRSPIGRKYHPVLANDRAVLEMSSMDQGPSSSSSAFPDQHPNIRKVNTSVNGSSDAKEENPSHENQPNGSLQQESKLELFGFDSLVNILGLKSMTGEHVAQPSSPRDGEDISITAGLPKPAAPKLGTLMGVFIPCLQSILGIIYYIRFSWIVGMAGIGETLLLVSLCGTCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGALYILGAVETFLKAVPSAGIFRETITQVNGTAIARPIQSPSSHDLQIYGIVLTILLCFIVFGGVKMINRVAPAFLIPVLFSVVCIFLGIFLAGKDHPSEGITGLSSDTFKENWSSDYQRTNNAGIPETDGSVTWNFNSLVGLFFPAVTGIMAGSNRSSSLRDTQRSIPVGTLAATLTTTFLYLVSLMLFGAVATREKLLTDRLLTATIAWPFPSLIKIGIILSTMGAALQSLTGAPRLLAAIANDDILPILNYFKVGDASEPHVATFFTAFLCIGCVVIGNLDLITPTVTMFFLLCYTGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLVGALLCIVIMFLISWSFTVVSLLLASLIYKYVSIQGKAGDWGDGFKSAYFQLALRSLRSLGASQVHPKNWYPIPLVFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECAEDAKTACKQLSTYIDYKNCEGVAEIVVAPNMSEGFRGIIQTMGLGNLKPNIVVMRYPEIWRRENLIEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQRQYGTIDLYWIVRDGGLMLLLSQLLLTKESFENCKIQVFCIAEDDADAEGLKADVKKFLYDLRMQAEVFVITMKWDAQMDGGGGSPAQDESMDAFTSAQQRIDNYLTQMKATAEREGTPLMADGKPVVVNEKQVEKFLYTTLKLNSTILRYSRMAAVVLVSLPPPPVSHPAYFYMEYMDLLLEKIPRILIVRGYRKDVVTLFT*






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