SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G19490 | AT | Annotation by Michelle Graham. TAIR10: VPS54 | chr4:10616017-10622934 FORWARD LENGTH=1034 | SoyBase | E_val: 0 | ISS |
| GO:0042147 | GO-bp | Annotation by Michelle Graham. GO Biological Process: retrograde transport, endosome to Golgi | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| PTHR12965 | Panther | VACUOLAR PROTEIN SORTING 54 | JGI | ISS | |
| PF07928 | PFAM | Vps54-like protein | JGI | ISS | |
| UniRef100_B9SLV8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Vacuolar protein sorting, putative n=1 Tax=Ricinus communis RepID=B9SLV8_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1L220 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1L220_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma09g10070 not represented in the dataset |
Glyma09g10070 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g22236 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g083800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g10070.3 sequence type=transcript gene model=Glyma09g10070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGCTAAACTTCCCTCTGTTCTGAGAACTTATCGAGATACACTGACTGCTGATATGAAGAGTGCTATTAAGACTGCTGTTGCTGAGTTGCTTCCGGTTCTTGCTTGTCGAGGTTCAGAATCAGAGTTCTTTTCTGGAGACAGAGCTGTGGATGCAGATGGTGGAGGTGCATCACTTGCTAGCAAGTTGAGGAGCCTATCATCTGACTGTTTTGTGCATCTTCTAGGTGCTATTTTCTTGATAGTACAGTGATTGCAGGCACATTTAGTGCGGGCTGCTGAAGTGAAAAAGACGATTGAATGGATTTTAAGCAACCGTGATGGTCATTATGCTACCGATTCAGTTGTGGCGGCAATTGTTCATGGTGCTGTAGCTGCAGAAACATCCCAAGAAAGCGAGTCTCATGGTACTACATTTTTGCCATATTCACCACAAAGAAGTATTGCCAAGGGTTCTTCATTTCAGGGAAAAGCAATTGATTCTGTGAGCTCCTCAAACATGTCAAAAAATTTCAGAGCTGATATATTGCGAGAAAACGCAGAAGCTGTCTTTGCAGCATGTGATGCTGCTCATGGAAGATGGGCAAAGCTTCTTGGGGTCCGTGCAATTCTTCATCCTAGGTTGAAATTGCAGGAGTTTCTAACCATATACAACATTACCCAGGAGTTCATTACTGCTACAGAAAAAATTGGTGGGAGATTGGGATACAGCATCCGTGGGACACTGCAATCACAGGCCAAGGCTTTTGTTGATTTTCAGCATGAATCTCGGATGTCAAAGATTAAGGCAGTGCTTGACCAGGAAACCTGGGTGGAGATAGATGTTCCTGATGAATTTCAATCCATCATTAATTTGCTTTTTACATCTGATAATTTGGCTTCTGAGAACCTTAATGAAATCGAGGATGATATTTCTACCAGTTACAATGGTGTGGTGACTAATAATGATGTTCTGCCGATGGCAGACAGTTCAGAGTCAACTGCTGAACAGCAAATTATGCGGTCTAATTCCATTGAAGCATCTTTGAATAATGAAACATCAGATAGATCCAAGTCCCCGGTTGATTCAACGGAACCAAATAAAGCTCATGGTAGGATTTCATCAGCACATAGTAACAATACTGAGAAAGACCATAAAAAATCTACATCTCAGGCTCTTTATTACAAAGGTGTTGGTTATCACATGGTAAACTGTGGCTTAATATTGCTGAAGATGTTGTCGGAGTACATTGATATGAACAACCTTTTGCCAACACTATCTTCAGAAGTTGTTCACCGTGTAGTAGAAATCTTGAAGTTTTTCAACACAAGAACATGCCAACTTGTGCTTGGGGCTGGTGCTATGCAGGTGTCTGGTTTGAAGTCCATCACGTCTAAACACCTGGCGTTGGCAAGTCAAGTCATTAGTTTTGTACATGCTATTATTCCAGAAATTCGGAAGATTCTTTTTCTTAAAGTACCTGAGACTAGAAAAACACTATTGCTTTCTGAGATCGATCGGGTTGCTCAGGATTATAAAGTCCACAGAGATGAAATACATAGTAAATTAGTTCAAATAATGCGAGAAAGATTACTGGTACATTTACGTGGCTTGCCTCAAATTGTTGAGAGTTGGAATAGACCTGAGGATGCTGACCCTCAGCCTAGTCAATTTGCTCGGTCCCTTACAAAGGAAGTTGGATACCTTCAACGTGTTCTATCTCGAACTTTGAATGAAGATGATGTTCAAGCAATTTTCAGTCAAGTGGTCGTTATATTTCACTCACAAATTTCTGAAGCATTTTCAAGATTTGATATAAGCACTCCTCAAGCACAGAATAGGCTATATCGAGATGTCAAACATATTCTTCAATGCATACGATTATTGCCATTGGGTGATTTGAGTAAATCTGATACCCCAAACTGGGGTCAGCTGGATGAATTCTTGGTGAAAAGATTTGGAAATGATGCTGTTCAGTAAACTGTATTGTAAAGTAGCAATTCAATTCCTTCCGTGGGAAGGCTAACATACTTTGGAAGATATGGGGGTGATTTAAACCTTCTTCACTCTGCATTTTCGTGTAACACTAAATTGAGGCCTTTGGTTGGTCTGTGGTAGATATACAAGGTAATGTATCATTTCTGAGCATTGTGCAGCCGTGGTTGGTCATTTAACAAGTTTTGTAGCAGTCGATGTCGATATTCAAATTCTTGGTTTGTCTCCATAATTGTAATGTTAAGTCGAAAATATATATGATTTAGCGAATGAATTAAGTTTTGTCCCCCCCACCCCAATCTATCTATCCCTTTGCTTCTTCAGCCATGGCTATCGATGCATCAATATGTACATGATTCGTGAAATCTATGGTGATATTACCGATTTGTGTGTTCTATTCAAGTGTATATTTGCGGTTCTCTTACAAGTTACAAGAAGTACCTACCTTCATTTGAGGATTTCTTTTTAGTTTTTCATGAACAACAAAACCTTCGCAATAGAATAAAGACAAATATACACCTTTGAAAGTGTTATGGTTAGAACCGGTGTCAAGAACGGAGAAGTGTTGACATGATATTTGCCCTAATCAAATAATAAT
>Glyma09g10070.2 sequence type=CDS gene model=Glyma09g10070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCTAAACTTCCCTCTGTTCTGAGAACTTATCGAGATACACTGACTGCTGATATGAAGAGTGCTATTAAGACTGCTGTTGCTGAGTTGCTTCCGGTTCTTGCTTGTCGAGGTTCAGAATCAGAGTTCTTTTCTGGAGACAGAGCTGTGGATGCAGATGGTGGAGGTGCATCACTTGCTAGCAAGTTGAGGAGCCTATCATCTGACTGTTTTGTGCATCTTCTAGGTGCTATTTTCTTGATAGTACAGGCACATTTAGTGCGGGCTGCTGAAGTGAAAAAGACGATTGAATGGATTTTAAGCAACCGTGATGGTCATTATGCTACCGATTCAGTTGTGGCGGCAATTGTTCATGGTGCTGTAGCTGCAGAAACATCCCAAGAAAGCGAGTCTCATGGTACTACATTTTTGCCATATTCACCACAAAGAAGTATTGCCAAGGGTTCTTCATTTCAGGGAAAAGCAATTGATTCTGTGAGCTCCTCAAACATGTCAAAAAATTTCAGAGCTGATATATTGCGAGAAAACGCAGAAGCTGTCTTTGCAGCATGTGATGCTGCTCATGGAAGATGGGCAAAGCTTCTTGGGGTCCGTGCAATTCTTCATCCTAGGTTGAAATTGCAGGAGTTTCTAACCATATACAACATTACCCAGGAGTTCATTACTGCTACAGAAAAAATTGGTGGGAGATTGGGATACAGCATCCGTGGGACACTGCAATCACAGGCCAAGGCTTTTGTTGATTTTCAGCATGAATCTCGGATGTCAAAGATTAAGGCAGTGCTTGACCAGGAAACCTGGGTGGAGATAGATGTTCCTGATGAATTTCAATCCATCATTAATTTGCTTTTTACATCTGATAATTTGGCTTCTGAGAACCTTAATGAAATCGAGGATGATATTTCTACCAGTTACAATGGTGTGGTGACTAATAATGATGTTCTGCCGATGGCAGACAGTTCAGAGTCAACTGCTGAACAGCAAATTATGCGGTCTAATTCCATTGAAGCATCTTTGAATAATGAAACATCAGATAGATCCAAGTCCCCGGTTGATTCAACGGAACCAAATAAAGCTCATGGTAGGATTTCATCAGCACATAGTAACAATACTGAGAAAGACCATAAAAAATCTACATCTCAGGCTCTTTATTACAAAGGTGTTGGTTATCACATGGTAAACTGTGGCTTAATATTGCTGAAGATGTTGTCGGAGTACATTGATATGAACAACCTTTTGCCAACACTATCTTCAGAAGTTGTTCACCGTGTAGTAGAAATCTTGAAGTTTTTCAACACAAGAACATGCCAACTTGTGCTTGGGGCTGGTGCTATGCAGGTGTCTGGTTTGAAGTCCATCACGTCTAAACACCTGGCGTTGGCAAGTCAAGTCATTAGTTTTGTACATGCTATTATTCCAGAAATTCGGAAGATTCTTTTTCTTAAAGTACCTGAGACTAGAAAAACACTATTGCTTTCTGAGATCGATCGGGTTGCTCAGGATTATAAAGTCCACAGAGATGAAATACATAGTAAATTAGTTCAAATAATGCGAGAAAGATTACTGGTACATTTACGTGGCTTGCCTCAAATTGTTGAGAGTTGGAATAGACCTGAGGATGCTGACCCTCAGCCTAGTCAATTTGCTCGGTCCCTTACAAAGGAAGTTGGATACCTTCAACGTGTTCTATCTCGAACTTTGAATGAAGATGATGTTCAAGCAATTTTCAGTCAAGTGGTCGTTATATTTCACTCACAAATTTCTGAAGCATTTTCAAGATTTGATATAAGCACTCCTCAAGCACAGAATAGGCTATATCGAGATGTCAAACATATTCTTCAATGCATACGATTATTGCCATTGGGTGATTTGAGTAAATCTGATACCCCAAACTGGGGTCAGCTGGATGAATTCTTGGTGAAAAGATTTGGAAATGATGCTGTTCAGTAA >Glyma09g10070.3 sequence type=CDS gene model=Glyma09g10070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCAAAAAATTTCAGAGCTGATATATTGCGAGAAAACGCAGAAGCTGTCTTTGCAGCATGTGATGCTGCTCATGGAAGATGGGCAAAGCTTCTTGGGGTCCGTGCAATTCTTCATCCTAGGTTGAAATTGCAGGAGTTTCTAACCATATACAACATTACCCAGGAGTTCATTACTGCTACAGAAAAAATTGGTGGGAGATTGGGATACAGCATCCGTGGGACACTGCAATCACAGGCCAAGGCTTTTGTTGATTTTCAGCATGAATCTCGGATGTCAAAGATTAAGGCAGTGCTTGACCAGGAAACCTGGGTGGAGATAGATGTTCCTGATGAATTTCAATCCATCATTAATTTGCTTTTTACATCTGATAATTTGGCTTCTGAGAACCTTAATGAAATCGAGGATGATATTTCTACCAGTTACAATGGTGTGGTGACTAATAATGATGTTCTGCCGATGGCAGACAGTTCAGAGTCAACTGCTGAACAGCAAATTATGCGGTCTAATTCCATTGAAGCATCTTTGAATAATGAAACATCAGATAGATCCAAGTCCCCGGTTGATTCAACGGAACCAAATAAAGCTCATGGTAGGATTTCATCAGCACATAGTAACAATACTGAGAAAGACCATAAAAAATCTACATCTCAGGCTCTTTATTACAAAGGTGTTGGTTATCACATGGTAAACTGTGGCTTAATATTGCTGAAGATGTTGTCGGAGTACATTGATATGAACAACCTTTTGCCAACACTATCTTCAGAAGTTGTTCACCGTGTAGTAGAAATCTTGAAGTTTTTCAACACAAGAACATGCCAACTTGTGCTTGGGGCTGGTGCTATGCAGGTGTCTGGTTTGAAGTCCATCACGTCTAAACACCTGGCGTTGGCAAGTCAAGTCATTAGTTTTGTACATGCTATTATTCCAGAAATTCGGAAGATTCTTTTTCTTAAAGTACCTGAGACTAGAAAAACACTATTGCTTTCTGAGATCGATCGGGTTGCTCAGGATTATAAAGTCCACAGAGATGAAATACATAGTAAATTAGTTCAAATAATGCGAGAAAGATTACTGGTACATTTACGTGGCTTGCCTCAAATTGTTGAGAGTTGGAATAGACCTGAGGATGCTGACCCTCAGCCTAGTCAATTTGCTCGGTCCCTTACAAAGGAAGTTGGATACCTTCAACGTGTTCTATCTCGAACTTTGAATGAAGATGATGTTCAAGCAATTTTCAGTCAAGTGGTCGTTATATTTCACTCACAAATTTCTGAAGCATTTTCAAGATTTGATATAAGCACTCCTCAAGCACAGAATAGGCTATATCGAGATGTCAAACATATTCTTCAATGCATACGATTATTGCCATTGGGTGATTTGAGTAAATCTGATACCCCAAACTGGGGTCAGCTGGATGAATTCTTGGTGAAAAGATTTGGAAATGATGCTGTTCAGTAA
>Glyma09g10070.2 sequence type=predicted peptide gene model=Glyma09g10070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AKLPSVLRTYRDTLTADMKSAIKTAVAELLPVLACRGSESEFFSGDRAVDADGGGASLASKLRSLSSDCFVHLLGAIFLIVQAHLVRAAEVKKTIEWILSNRDGHYATDSVVAAIVHGAVAAETSQESESHGTTFLPYSPQRSIAKGSSFQGKAIDSVSSSNMSKNFRADILRENAEAVFAACDAAHGRWAKLLGVRAILHPRLKLQEFLTIYNITQEFITATEKIGGRLGYSIRGTLQSQAKAFVDFQHESRMSKIKAVLDQETWVEIDVPDEFQSIINLLFTSDNLASENLNEIEDDISTSYNGVVTNNDVLPMADSSESTAEQQIMRSNSIEASLNNETSDRSKSPVDSTEPNKAHGRISSAHSNNTEKDHKKSTSQALYYKGVGYHMVNCGLILLKMLSEYIDMNNLLPTLSSEVVHRVVEILKFFNTRTCQLVLGAGAMQVSGLKSITSKHLALASQVISFVHAIIPEIRKILFLKVPETRKTLLLSEIDRVAQDYKVHRDEIHSKLVQIMRERLLVHLRGLPQIVESWNRPEDADPQPSQFARSLTKEVGYLQRVLSRTLNEDDVQAIFSQVVVIFHSQISEAFSRFDISTPQAQNRLYRDVKHILQCIRLLPLGDLSKSDTPNWGQLDEFLVKRFGNDAVQ* >Glyma09g10070.3 sequence type=predicted peptide gene model=Glyma09g10070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSKNFRADILRENAEAVFAACDAAHGRWAKLLGVRAILHPRLKLQEFLTIYNITQEFITATEKIGGRLGYSIRGTLQSQAKAFVDFQHESRMSKIKAVLDQETWVEIDVPDEFQSIINLLFTSDNLASENLNEIEDDISTSYNGVVTNNDVLPMADSSESTAEQQIMRSNSIEASLNNETSDRSKSPVDSTEPNKAHGRISSAHSNNTEKDHKKSTSQALYYKGVGYHMVNCGLILLKMLSEYIDMNNLLPTLSSEVVHRVVEILKFFNTRTCQLVLGAGAMQVSGLKSITSKHLALASQVISFVHAIIPEIRKILFLKVPETRKTLLLSEIDRVAQDYKVHRDEIHSKLVQIMRERLLVHLRGLPQIVESWNRPEDADPQPSQFARSLTKEVGYLQRVLSRTLNEDDVQAIFSQVVVIFHSQISEAFSRFDISTPQAQNRLYRDVKHILQCIRLLPLGDLSKSDTPNWGQLDEFLVKRFGNDAVQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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