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Report for Sequence Feature Glyma09g09990

Feature Type:gene_model
Chromosome:Gm09
Start:10019155
stop:10022319
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g09990
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G44550AT Annotation by Michelle Graham. TAIR10: Uncharacterised protein family (UPF0497) | chr5:17942100-17943174 REVERSE LENGTH=197 SoyBaseE_val: 7.00E-62ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PTHR11615Panther NITRATE, FROMATE, IRON DEHYDROGENASE JGI ISS
PTHR11615:SF45Panther SUBFAMILY NOT NAMED JGI ISS
PF04535PFAM Domain of unknown function (DUF588) JGI ISS
UniRef100_C6TG62UniRef Annotation by Michelle Graham. Most informative UniRef hit: CASP-like protein 9 n=1 Tax=Glycine max RepID=CSPL9_SOYBN SoyBaseE_val: 3.00E-87ISS
UniRef100_I1L218UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1L218_SOYBN SoyBaseE_val: 3.00E-117ISS

Expression Patterns of Glyma09g09990
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g09990
ParalogEvidenceComments
Glyma15g22100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g09990 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g083400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g09990
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g09990
>Glyma09g09990.1   sequence type=CDS   gene model=Glyma09g09990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAAAGAAGGATTGGGTTCTTTTGTCCCTCAGAGTGGTTGCATTTTTGGCCACTGCTTCTGCCACACTTGTCATGGCTTTTAACAAACAAACAAAAAGCTTTGTAGTTGCCACCGTTGGTAGCACCCCAATAACAGCTACTTTTGCAGCAAAGTTTAACCAAACTCCAGCTTTTGTGTTCTTTGTGATAGCCAATGGAAATGCCGCTTTGCATAATAACTTGGTGATGATAGCAATGGAAATATTAGGAACCAGATATGATTACAAAGGACCCCGGCTTGCATTGATTGCTATATTAGACATGATGACTATGGCTCTAGCATCAGATGGAGATGGTGCAGCAACATTCATGTCTGAATTGGGAAAGAATGGTAATTCACATGCAAAATGGGATAAGATCTGTGACAAATTCGAAACCTATTGCGACCGAGGTGTTGTTGCTCTTATTGTCTCTTTCGTTGGCTTCATTCTCCTCCTCATTATTTCAGTCATGTCCATCATCAAGCTGCTCAAGCCAAATCGCATCAACCACGCTTCTCCATAA
Predicted protein sequences of Glyma09g09990
>Glyma09g09990.1   sequence type=predicted peptide   gene model=Glyma09g09990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPKKDWVLLSLRVVAFLATASATLVMAFNKQTKSFVVATVGSTPITATFAAKFNQTPAFVFFVIANGNAALHNNLVMIAMEILGTRYDYKGPRLALIAILDMMTMALASDGDGAATFMSELGKNGNSHAKWDKICDKFETYCDRGVVALIVSFVGFILLLIISVMSIIKLLKPNRINHASP*






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