Report for Sequence Feature Glyma09g09460
Feature Type: gene_model
Chromosome: Gm09
Start: 9336761
stop: 9339240
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma09g09460
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G08530 AT
Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G09995.2); Has 140 Blast hits to 140 proteins in 53 species: Archae - 0; Bacteria - 63; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr1:2701252-2702952 FORWARD LENGTH=257
SoyBase E_val: 3.00E-11 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0009536 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plastid
SoyBase N/A ISS
GO:0009941 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_B7U9U3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: AT5G09995-like protein n=1 Tax=Arabidopsis arenosa RepID=B7U9U3_CARAS
SoyBase E_val: 4.00E-08 ISS
UniRef100_I1L1Z5 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L1Z5_SOYBN
SoyBase E_val: 2.00E-129 ISS
Expression Patterns of Glyma09g09460
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma09g09460
Paralog Evidence Comments
Glyma15g20885 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma09g09460 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.09g080400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma09g09460
Coding sequences of Glyma09g09460
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma09g09460.1 sequence type=CDS gene model=Glyma09g09460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTTGTCTCAAACGCATGTTCTGTCTTCGCGCCCTTTCAGCTTCAACAGATTTTCAATGCCCACAAAAATGGCCGTTATCACTTCACGTGCTCCGTTCTCCGTTCGTGTCAGTACCTCAACCACGTCGACGCCGCTCGCCGGCGACACAATTCCGGCGCTGGTAATGTCAGAACAGCAGACACCCAATTTGCAGTCGCGGGTCGCGGCAGCTCCGTCCATTGCGGTGGCCAGAAATCTAGGGTTCCGGCCCACCCCTGAATTGGGGCTTCTCTCTCACTTGTTCGTTCTCTCCATGGCTTTTGGGGCGTTTTTCTCAGTAGCAGTGTTTTCCATTCCAACCTTAATTGCTTTTGGAAGATTAGGAGCTTCAGTGAAGAAATTGTCAAAGGTTGTTTCAGAAGAGGTACCTGGAACTTTACATTCTCTGAAACTTTCTAGCATGGAGCTGAACGACTTGACCCAACAACTTAGTAGTCTCAGGCATAAAATTGCGGGCATTTCTAAGGGAAAGCAGGACAGCAGCACTGCCAGATCAAGATCCTTTCGTAAGGGGAACCCAGCATCCTAG
Predicted protein sequences of Glyma09g09460
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma09g09460.1 sequence type=predicted peptide gene model=Glyma09g09460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MLSQTHVLSSRPFSFNRFSMPTKMAVITSRAPFSVRVSTSTTSTPLAGDTIPALVMSEQQTPNLQSRVAAAPSIAVARNLGFRPTPELGLLSHLFVLSMAFGAFFSVAVFSIPTLIAFGRLGASVKKLSKVVSEEVPGTLHSLKLSSMELNDLTQQLSSLRHKIAGISKGKQDSSTARSRSFRKGNPAS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
