Report for Sequence Feature Glyma09g09400
Feature Type: gene_model
Chromosome: Gm09
Start: 9215883
stop: 9222716
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma09g09400
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G04450 AT
Annotation by Michelle Graham. TAIR10: WRKY family transcription factor | chr4:2218379-2221113 FORWARD LENGTH=528
SoyBase E_val: 8.00E-60 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0045892 GO-bp
Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
GO:0043565 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding
SoyBase N/A ISS
PF03106 PFAM
WRKY DNA -binding domain
JGI ISS
UniRef100_G7IQG1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: WRKY transcription factor n=1 Tax=Medicago truncatula RepID=G7IQG1_MEDTR
SoyBase E_val: 1.00E-107 ISS
UniRef100_I1MHN1 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MHN1_SOYBN
SoyBase E_val: 0 ISS
Proteins Associated with Glyma09g09400
Locus Gene Symbol Protein Name
WRKY117 WRKY Transcription Factor
Expression Patterns of Glyma09g09400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma09g09400
Paralog Evidence Comments
Glyma15g20990 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma09g09400 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.09g080000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma09g09400
Coding sequences of Glyma09g09400
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma09g09400.2 sequence type=CDS gene model=Glyma09g09400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAAGATAAAATTGTGATAAATGAATTGCTGCAAGATGAGGAAAAGCCATCATCTGATAATACTATGGGATCTACTCTCCTCAGCTTGAGCCTGAATAACTCAGGACAATCCCTTAACCAAATGGGGATGCTGCGAATCAAGCTTGAGGAAGCAAAGAAAGAGAATGAAATCTTAAAGGCTATGCTGAATCAGGTTAATGAACACTGCACTACTCTTCAGAATCGCATACTTTTTGAGATGCAGCAGCATCAACTATCAGCTTCATCATCATCACCTCGCAATAATAATAATCATCATGACTCGCAGGGAAATAAACAAGATGCCGAGAAACCAATGCTACACACTCGGCAGTTTTTGAATATTGGCGAGTCTTCAATTTTAGACGGCAACACAAAAGCATGTGCAATAGCAGAAAACGTTGAAAAGAAGATATTAGGCAAAAACCTTGCAAGTGATATTAATAAGTACAATGTTAAAGGTGAAATCAACAGTCAAATAACATTGAATGAAGTAAAAAGCACAGAAGATCAAGCATCTGAGGTTACTTGCAGGAGAGCTAGAGTGTCCATAAGAGCACGATCAGATTTTTCTTTGATGGGCGATGGGTGTCAATGGAGAAAGTACGGACAAAAGACAGCGAAAGGCAACCCTTGTCCTCGAGCCTACTACCGTTGCAGCATGGGAACTGCATGCCCAGTTCGTAAGCATGTGCAAAGGTGTTTTAAGGATGAGACTATTCTCATCACAACCTATGAAGGGAACCACAACCATCCACTCCCACCAGCAGCAAGACCCTTGGCAAGCTCAACATCAGCTGCACTGAACATGTTCCTTTCTGGCTCAATCACAAGCTCACATTGCACCACTACTCTCTCAAACTCACCCCTCTTCTCTTCATCACCATCCACTATTTCCCCAAGTACTGCTGTGGCCACTTTCTCCCACAATGCAACATGCCCCACAGTAACACTGGACCTAACCCAGCCCAACAACTATCTCCAATTCCAAAGAGCCACCACTTCTTCACAAGACCGCCATACACCATCATTTTTCCCTCTTCCATTGCATGGAAACCCTCAAAATTATTCTGAGGATTTGATGCACTTGTGGTATAGGGTTCCACTTCCAACCATGTTAGCCCCAGAGAATAAAAACCTTGCCCTAGTGGATGTTGTCAGTGAGGCTATAACCAAAGATCCTTCTCTCAAAGCAGCATTGTTTTCAGCCATTTCCTCACTCACTGAAGATCCTGATCAGAAGAACAACATCAATAACCAAAGCCAACTTAGTAAGAGTAGTGGTGGTTATGACCCTTGTTCTAAGGTGCCTGCAATAATACCACCTCATCAGCCTTGCACTACTCAGTTGATTTAG
Predicted protein sequences of Glyma09g09400
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma09g09400.2 sequence type=predicted peptide gene model=Glyma09g09400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEDKIVINELLQDEEKPSSDNTMGSTLLSLSLNNSGQSLNQMGMLRIKLEEAKKENEILKAMLNQVNEHCTTLQNRILFEMQQHQLSASSSSPRNNNNHHDSQGNKQDAEKPMLHTRQFLNIGESSILDGNTKACAIAENVEKKILGKNLASDINKYNVKGEINSQITLNEVKSTEDQASEVTCRRARVSIRARSDFSLMGDGCQWRKYGQKTAKGNPCPRAYYRCSMGTACPVRKHVQRCFKDETILITTYEGNHNHPLPPAARPLASSTSAALNMFLSGSITSSHCTTTLSNSPLFSSSPSTISPSTAVATFSHNATCPTVTLDLTQPNNYLQFQRATTSSQDRHTPSFFPLPLHGNPQNYSEDLMHLWYRVPLPTMLAPENKNLALVDVVSEAITKDPSLKAALFSAISSLTEDPDQKNNINNQSQLSKSSGGYDPCSKVPAIIPPHQPCTTQLI*