Glyma09g09220 - SoyBase

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Report for Sequence Feature Glyma09g09220

Feature Type:	gene_model
Chromosome:	Gm09
Start:	8851769
stop:	8858989
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g09220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G17430	AT	Annotation by Michelle Graham. TAIR10: Nucleotide-sugar transporter family protein \| chr3:5966597-5968962 FORWARD LENGTH=375	SoyBase	E_val: 0	ISS
GO:0006863	GO-bp	Annotation by Michelle Graham. GO Biological Process: purine nucleobase transport	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0008514	GO-mf	Annotation by Michelle Graham. GO Molecular Function: organic anion transmembrane transporter activity	SoyBase	N/A	ISS
KOG1441	KOG	Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter	JGI		ISS
PTHR11132	Panther	SOLUTE CARRIER FAMILY 35	JGI		ISS
PF03151	PFAM	Triose-phosphate Transporter family	JGI		ISS
UniRef100_G7JQ40	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Solute carrier family 35 member C2 n=1 Tax=Medicago truncatula RepID=G7JQ40_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0001B63A0D	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0001B63A0D related cluster n=1 Tax=unknown RepID=UPI0001B63A0D	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g09220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g09220

Paralog	Evidence	Comments
Glyma15g21500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g09220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g078700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g09220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g09220

Limit To All Plant Sequences

>Glyma09g09220.2   sequence type=transcript   gene model=Glyma09g09220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATAGTAAGAAAGCACATGGTACGAAGTAGCTCCCCCATTAATGACTCGTTTCGAAAGTGGTAACTTTTCTCTTCAGCCACTTCCCAATTACCTACCCCATTCATTCATTTTTTATCATCTACTGTACTATTATTATTCCCACCCACCTTCCCTATACTTCTTTCTCTTTCTCTCTCACTCAGATTTGTAACCATTGCAATTCGCAATTCCATCTATCTTCTCTTCTCCTCCTTATATATTCCACTCCACTGGGTACCCTCTCCCCCTTATTCCTCACTTCTCTTCTCTTCTCTTCTCTTCGAGGGTACCCCTCCTCGCAGATCCGATCCGCACCCTTCACTAAACCCATTATTATTGATTATTGATTGATAATAACATTTGGGTTTCATTTTCATTCCAAGTTGTTGCATTTTTCAACATGTCTTTAGCTCACTGCTGAACCCCTTTTCTTTCTTTCTTTGCCCCCTTTTGTCCAAACCCCCAAAACAAAAACAAAAAAAATGATGATCAACAAAACGCTTTTTCTCACTTATGTCTACTTGTTCATCTACATCCTGCTCTCTTCCGGCGTCATTTTGTACAATAAGTGGGTTCTGTCGCCAAAATACTTCAACTTTCCCCTTCCCATAACGCTCACGATGATTCACATGGCCTTTTCTGGGGCAGTCGCATTTTTCCTTGTTCGGGTCTTTAAGATTGTGACTCCTGTCAAAATGACATTTGAAATATATGCAACTTGCGTGGTACCAATAAGTGCTTTCTTTGCATCTAGTCTTTGGTTTGGTAACACAGCCTACTTGCACATCTCCGTGGCTTTTATCCAGATGCTCAAAGCTCTGATGCCGGTGGCAACTTTCATTATGGCTGTTTTGTGTGGTATTGACAAAGCAAGGTGTGATGTGTTCTTGAACATGTTGCTGGTCAGTGTTGGGGTTGTCATTTCCTCATATGGGGAAATTCATTTTAATATAGTTGGTACAGTTTACCAGGTCACAGGCATATTTGCAGAAGCTTTAAGACTGGTCTTAACACAAGTTCTTCTGCAGAAAAAGGGGTTGACTTTAAATCCTATTACAAGCTTATATTACATAGCTCCCTGCAGTTTTGTGTTTCTCTTTGTGCCTTGGTACCTACTAGAGAAGCCTGTGATGGAAGTTTCACAGATTCAGTTCAATTTTTGGATCTTCTTTTCCAACGCTATATGTGCTCTAGCCTTGAATTTCTCCATTTTCTTAGTCATTGGTAGAACCGGTGCTGTAACCATCCGGGTCGCTGGTGTGCTTAAAGACTGGATATTGATAGCTCTTTCAACTGTTATATTCCCAGAATCTACAATAACTGGGTTGAATATAGTTGGCTATGCTATTGCATTGTGTGGAGTTGTGATGTACAATTACATAAAGGTTAAGGATGTCCGTGCCTCTCAATTGCCTGTTGAAAGTATACCGGATCGGATCACAAAGGACTGGAAATTCGAGAAGAAGTCATCCGATATATATGTGCCAGATAACATTGGTGACAATGAGGGAAGCAGTGGAGGGTTGGTAACTGTTCTTACAAATCAATACAAGACTTTTTGGCATGCTTTGGTCTTATTGAGACGTTTGTTAAGAAACTTATGAGGAAAGATTAAATTACTACAAGGCAAGTATGTTTAATAGTGGAGTTTTTAGGTGATAAATTACTGGATAGTAAATGTATCTTATTAGTAAAGATAATATTAATTACCATTTTCTTTCATTCTCAATTGTATATTCTTACATCTCTTTGGATTCTCTCATTCTAATGTGTATTAAATTTTAATGAGGTGTTCTTCTTGTGAAAGTTTATTAAGAGTTGTTTCTTACCCGTGTTTGATCTCTCTTTTGATTGACATTTAGTTTTTACCTTTCTTCCTTAACATTTGAAATGTTACAATTTCTAATTAGTTGATCATATAATTTTTTTTATATTGGTGGTACATAAAATT

Coding sequences of Glyma09g09220

Limit To All Plant Sequences

>Glyma09g09220.1   sequence type=CDS   gene model=Glyma09g09220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGATCAACAAAACGCTTTTTCTCACTTATGTCTACTTGTTCATCTACATCCTGCTCTCTTCCGGCGTCATTTTGTACAATAAGTGGGTTCTGTCGCCAAAATACTTCAACTTTCCCCTTCCCATAACGCTCACGATGATTCACATGGCCTTTTCTGGGGCAGTCGCATTTTTCCTTGTTCGGGTCTTTAAGATTGTGACTCCTGTCAAAATGACATTTGAAATATATGCAACTTGCGTGGTACCAATAAGTGCTTTCTTTGCATCTAGTCTTTGGTTTGGTAACACAGCCTACTTGCACATCTCCGTGGCTTTTATCCAGATGCTCAAAGCTCTGATGCCGGTGGCAACTTTCATTATGGCTGTTTTGTGTGGTATTGACAAAGCAAGGTGTGATGTGTTCTTGAACATGTTGCTGGTCAGTGTTGGGGTTGTCATTTCCTCATATGGGGAAATTCATTTTAATATAGTTGGTACAGTTTACCAGGTCACAGGCATATTTGCAGAAGCTTTAAGACTGGTCTTAACACAAGTTCTTCTGCAGAAAAAGGGGTTGACTTTAAATCCTATTACAAGCTTATATTACATAGCTCCCTGCAGTTTTGTGTTTCTCTTTGTGCCTTGGTACCTACTAGAGAAGCCTGTGATGGAAGTTTCACAGATTCAGTTCAATTTTTGGATCTTCTTTTCCAACGCTATATGTGCTCTAGCCTTGAATTTCTCCATTTTCTTAGTCATTGGTAGAACCGGTGCTGTAACCATCCGGGTCGCTGGTGTGCTTAAAGACTGGATATTGATAGCTCTTTCAACTGTTATATTCCCAGAATCTACAATAACTGGGTTGAATATAGTTGGCTATGCTATTGCATTGTGTGGAGTTGTGATGTACAATTACATAAAGGTTAAGGATGTCCGTGCCTCTCAATTGCCTGTTGAAAGTATACCGGATCGGATCACAAAGGACTGGAAATTCGAGAAGAAGTCATCCGATATATATGTGCCAGATAACATTGGTGACAATGAGGGAAGCAGTGGAGGTAATGGTACTGCTTCTGATATGAAAATTGATGAAGAAACACCACTAATTTCATCATCAAGGTTATCTCATATTGGACGAACACAGTTAACCAACCAATATGCAACAGGAAAGTGA

>Glyma09g09220.2   sequence type=CDS   gene model=Glyma09g09220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGATCAACAAAACGCTTTTTCTCACTTATGTCTACTTGTTCATCTACATCCTGCTCTCTTCCGGCGTCATTTTGTACAATAAGTGGGTTCTGTCGCCAAAATACTTCAACTTTCCCCTTCCCATAACGCTCACGATGATTCACATGGCCTTTTCTGGGGCAGTCGCATTTTTCCTTGTTCGGGTCTTTAAGATTGTGACTCCTGTCAAAATGACATTTGAAATATATGCAACTTGCGTGGTACCAATAAGTGCTTTCTTTGCATCTAGTCTTTGGTTTGGTAACACAGCCTACTTGCACATCTCCGTGGCTTTTATCCAGATGCTCAAAGCTCTGATGCCGGTGGCAACTTTCATTATGGCTGTTTTGTGTGGTATTGACAAAGCAAGGTGTGATGTGTTCTTGAACATGTTGCTGGTCAGTGTTGGGGTTGTCATTTCCTCATATGGGGAAATTCATTTTAATATAGTTGGTACAGTTTACCAGGTCACAGGCATATTTGCAGAAGCTTTAAGACTGGTCTTAACACAAGTTCTTCTGCAGAAAAAGGGGTTGACTTTAAATCCTATTACAAGCTTATATTACATAGCTCCCTGCAGTTTTGTGTTTCTCTTTGTGCCTTGGTACCTACTAGAGAAGCCTGTGATGGAAGTTTCACAGATTCAGTTCAATTTTTGGATCTTCTTTTCCAACGCTATATGTGCTCTAGCCTTGAATTTCTCCATTTTCTTAGTCATTGGTAGAACCGGTGCTGTAACCATCCGGGTCGCTGGTGTGCTTAAAGACTGGATATTGATAGCTCTTTCAACTGTTATATTCCCAGAATCTACAATAACTGGGTTGAATATAGTTGGCTATGCTATTGCATTGTGTGGAGTTGTGATGTACAATTACATAAAGGTTAAGGATGTCCGTGCCTCTCAATTGCCTGTTGAAAGTATACCGGATCGGATCACAAAGGACTGGAAATTCGAGAAGAAGTCATCCGATATATATGTGCCAGATAACATTGGTGACAATGAGGGAAGCAGTGGAGGGTTGGTAACTGTTCTTACAAATCAATACAAGACTTTTTGGCATGCTTTGGTCTTATTGAGACGTTTGTTAAGAAACTTATGA

Predicted protein sequences of Glyma09g09220

Limit To All Plant Sequences

>Glyma09g09220.1   sequence type=predicted peptide   gene model=Glyma09g09220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMINKTLFLTYVYLFIYILLSSGVILYNKWVLSPKYFNFPLPITLTMIHMAFSGAVAFFLVRVFKIVTPVKMTFEIYATCVVPISAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFIMAVLCGIDKARCDVFLNMLLVSVGVVISSYGEIHFNIVGTVYQVTGIFAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPVMEVSQIQFNFWIFFSNAICALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIVGYAIALCGVVMYNYIKVKDVRASQLPVESIPDRITKDWKFEKKSSDIYVPDNIGDNEGSSGGNGTASDMKIDEETPLISSSRLSHIGRTQLTNQYATGK*

>Glyma09g09220.2   sequence type=predicted peptide   gene model=Glyma09g09220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMINKTLFLTYVYLFIYILLSSGVILYNKWVLSPKYFNFPLPITLTMIHMAFSGAVAFFLVRVFKIVTPVKMTFEIYATCVVPISAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFIMAVLCGIDKARCDVFLNMLLVSVGVVISSYGEIHFNIVGTVYQVTGIFAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPVMEVSQIQFNFWIFFSNAICALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIVGYAIALCGVVMYNYIKVKDVRASQLPVESIPDRITKDWKFEKKSSDIYVPDNIGDNEGSSGGLVTVLTNQYKTFWHALVLLRRLLRNL*

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