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Report for Sequence Feature Glyma09g09140

Feature Type:gene_model
Chromosome:Gm09
Start:8698035
stop:8705857
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G63010AT Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein | chr5:25281739-25282967 FORWARD LENGTH=343 SoyBaseE_val: 2.00E-147ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0080008GO-cc Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
KOG0280 KOG Uncharacterized conserved protein JGI ISS
PTHR22850Panther WD40 REPEAT FAMILY JGI ISS
PTHR22850:SF17Panther RETINOBLASTOMA-BINDING PROTEIN-RELATED JGI ISS
PF00400PFAM WD domain, G-beta repeat JGI ISS
UniRef100_G7KEH9UniRef Annotation by Michelle Graham. Most informative UniRef hit: WD repeat-containing protein n=2 Tax=Medicago truncatula RepID=G7KEH9_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1L1X9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L1X9_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g09140 not represented in the dataset

Glyma09g09140 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g077900 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma09g09140.3   sequence type=transcript   gene model=Glyma09g09140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTTAATCAGCAAACTTTTTGAGATATTTTAAGGTAAGGTTTATTTTTTTAAGTAACAAAATTTAATATAATTTTGATTAAAATTTAATTAGTAAAAACCTTAGTTAAACCTCTGGTCTTCGGCATGAACGAAAACCTGTTCGAACGAATGTTGTGCTCCTTCAAAGCTTCTAGTGTTCTTCCAATTTCGCTCCTTCAACACTTCGGCCCCAATTGCTGTTAGTGGTCGTCTTCTTTGTTCAACCACGCTTCTCTCTAGTCTCTATGAATAGCGCGCATTTGTAGAATCTGTTCTGGAGATACGAGTAAGCCCACAGATTTTTTTTTTGTTTTTCCTGTGGGTGTGCATGGTTTACATGTGATGCAAGGTTTCTGTTAAGCTAGCTTGGCAATCATTTGGCTGGCATGGACATAGCACATTGCTATTTAAAGGGTAATGCTGATGCTGTGGAGTTTTGTCCACATGATCCCTACCATAATGTTTTAGCAGTATCCACTTACACATTACAAGAAGGTTCTCAGCCCTGTCGACATGGAAGCATTTCACTCTTCAATGTTGATGTGGAACCAGGTCACCTTGACATGGTTTTTAGTGAGGAAACTGCTGGGATTTTTGACATAAAGTGGAATCCACCTGGCGGGCATGCAAGTCCTTTTCTAGCTCAAGCAGATGCTGATGGATACTTGAGAATTAAAATGCTGGAGGGTTGCTGTAATGGAGTGGAAGGGGTTAATCTAAAGGAGATCACAAATGAAAAAATCAGTAACTCTATGTGCTTGTACCTGGATTGGAACCCTTCAGCCACATCCATCACAGTGGGGCTTTCTGACGGCTCTGTGTCTATTGTTTCTTTTCTTGAATCCAAGCTGGAAATTCAAGAAGAGTGGAAAGCTCATGATTATGAACTTTGGACAACCTCCTTTGATATCCACCAACCAAATTTGGTATACACTGGCTCTGATGATTGTAAATTCAGTTGTTGGGATTTGCGAGATAAACCTCCCAATGTGGTATTTCAGAGCTCTAAAGTCCACAAAATGGGTGTTTGTTGCATTGAGAAGAGTCCACATGACCCAAATACCTTGTTAACTGGCAGTTATGATGAATTCCTAAGGGTATGGGATTTAAGATCAATCTCAAAACCCCTTAATTCAATTAACTTGGGGGGAGGAGTTTGGAGGGTTAAGCACCACCCCTTCATTCCAGGCTTGGTTTTGGCTGCTTGTATGCACAATGGTTTTGCTATTGTCGCCATTAAAGGCAACAATGCCGAAGTGTCGGAAACTTACAAGAAGCATGATTCTCTTGCCTATGGAGCAGATTGGCAGAAAGGAGAAGCAAATCACATAGGTGGGAATACCAAACCACTGGTGGCTACTTGCTCATTCTACGACAAACTTGTTCGGGTGTGGAGGCCAGGAAATGATCTTATCTTGTAGAATGTAGATTGATGCTTAACGTTAAGTCATGAACCCACTTGAAAATGTGATACGTAGTTTATTTATTGAATTATGGTTGAATTACATGACACTTTCATTTACAGTTAATCATTTTTACTCACTCATTCACGGCTTGAAGGATGAGCTAACGTGTCACTCTTTGATTGTAGTTGATTGATCATGGTTTAACGGTTAGAAAAGAAAGTAGAACAACCTATACAACAAGTTTTTGTTTTTGTTTTTACTGCAAACTACAAGTT

>Glyma09g09140.4   sequence type=transcript   gene model=Glyma09g09140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTTAATCAGCAAACTTTTTGAGATATTTTAAGGTAAGGTTTATTTTTTTAAGTAACAAAATTTAATATAATTTTGATTAAAATTTAATTAGTAAAAACCTTAGTTAAACCTCTGGTCTTCGGCATGAACGAAAACCTGTTCGAACGAATGTTGTGCTCCTTCAAAGCTTCTAGTGTTCTTCCAATTTCGCTCCTTCAACACTTCGGCCCCAATTGCTGTTAGTGGTCGTCTTCTTTGTTCAACCACGCTTCTCTCTAGTCTCTATGAATAGCGCGCATTTGTAGAATCTGTTCTGGAGATACGAGTAAGCCCACAGGTTTCTGTTAAGCTAGCTTGGCAATCATTTGGCTGGCATGGACATAGCACATTGCTATTTAAAGGGTAATGCTGATGCTGTGGAGTTTTGTCCACATGATCCCTACCATAATGTTTTAGCAGTATCCACTTACACATTACAAGAAGGTTCTCAGCCCTGTCGACATGGAAGCATTTCACTCTTCAATGTTGATGTGGAACCAGGTCACCTTGACATGGTTTTTAGTGAGGAAACTGCTGGGATTTTTGACATAAAGTGGAATCCACCTGGCGGGCATGCAAGTCCTTTTCTAGCTCAAGCAGATGCTGATGGATACTTGAGAATTAAAATGCTGGAGGGTTGCTGTAATGGAGTGGAAGGGGTTAATCTAAAGGAGATCACAAATGAAAAAATCAGTAACTCTATGTGCTTGTACCTGGATTGGAACCCTTCAGCCACATCCATCACAGTGGGGCTTTCTGACGGCTCTGTGTCTATTGTTTCTTTTCTTGAATCCAAGCTGGAAATTCAAGAAGAGTGGAAAGCTCATGATTATGAACTTTGGACAACCTCCTTTGATATCCACCAACCAAATTTGGTATACACTGGCTCTGATGATTGTAAATTCAGTTGTTGGGATTTGCGAGATAAACCTCCCAATGTGGTATTTCAGAGCTCTAAAGTCCACAAAATGGGTGTTTGTTGCATTGAGAAGAGTCCACATGACCCAAATACCTTGTTAACTGGCAGTTATGATGAATTCCTAAGGGTATGGGATTTAAGATCAATCTCAAAACCCCTTAATTCAATTAACTTGGGGGGAGGAGTTTGGAGGGTTAAGCACCACCCCTTCATTCCAGGCTTGGTTTTGGCTGCTTGTATGCACAATGGTTTTGCTATTGTCGCCATTAAAGGCAACAATGCCGAAGTGTCGGAAACTTACAAGAAGCATGATTCTCTTGCCTATGGAGCAGATTGGCAGAAAGGAGAAGCAAATCACATAGGTGGGAATACCAAACCACTGGTGGCTACTTGCTCATTCTACGACAAACTTGTTCGGGTGTGGAGGCCAGGAAATGATCTTATCTTGTAGAATGTAGATTGATGCTTAACGTTAAGTCATGAACCCACTTGAAAATGTGATACGTAGTTTATTTATTGAATTATGGTTGAATTACATGACACTTTCATTTACAGTTAATCATTTTTACTCACTCATTCACGGCTTGAAGGATGAGCTAACGTGTCACTCTTTGATTGTAGTTGATTGATCATGGTTTAACGGTTAGAAAAGAAAGTAGAACAACCTATACAACAAGTTTTTGTTTTTGTTTTTACTGCAAACTACAAGTT

>Glyma09g09140.2   sequence type=CDS   gene model=Glyma09g09140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACATAGCACATTGCTATTTAAAGGGTAATGCTGATGCTGTGGAGTTTTGTCCACATGATCCCTACCATAATGTTTTAGCAGTATCCACTTACACATTACAAGAAGGTTCTCAGCCCTGTCGACATGGAAGCATTTCACTCTTCAATGTTGATGTGGAACCAGGTCACCTTGACATGGTTTTTAGTGAGGAAACTGCTGGGATTTTTGACATAAAGTGGAATCCACCTGGCGGGCATGCAAGTCCTTTTCTAGCTCAAGCAGATGCTGATGGATACTTGAGAATTAAAATGCTGGAGGGTTGCTGTAATGGAGTGGAAGGGGTTAATCTAAAGGAGATCACAAATGAAAAAATCAGTAACTCTATGTGCTTGTACCTGGATTGGAACCCTTCAGCCACATCCATCACAGTGGGGCTTTCTGACGGCTCTGTGTCTATTGTTTCTTTTCTTGAATCCAAGCTGGAAATTCAAGAAGAGTGGAAAGCTCATGATTATGAACTTTGGACAACCTCCTTTGATATCCACCAACCAAATTTGGTATACACTGGCTCTGATGATTGTAAATTCAGTTGTTGGGATTTGCGAGATAAACCTCCCAATGTGGTATTTCAGAGCTCTAAAGTCCACAAAATGGGTGTTTGTTGCATTGAGAAGAGTCCACATGACCCAAATACCTTGTTAACTGGCAGTTATGATGAATTCCTAAGGGTATGGGATTTAAGATCAATCTCAAAACCCCTTAATTCAATTAACTTGGGGGGAGGAGTTTGGAGGGTTAAGCACCACCCCTTCATTCCAGGCTTGGTTTTGGCTGCTTGTATGCACAATGGTTTTGCTATTGTCGCCATTAAAGGCAACAATGCCGAAGTGTCGGAAACTTACAAGAAGCATGATTCTCTTGCCTATGGAGCAGATTGGCAGAAAGGAGAAGCAAATCACATAGGTGGGAATACCAAACCACTGGTGGCTACTTGCTCATTCTACGACAAACTTGTTCGGGTGTGGAGGCCAGGAAATGATCTTATCTTGTAG

>Glyma09g09140.3   sequence type=CDS   gene model=Glyma09g09140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACATAGCACATTGCTATTTAAAGGGTAATGCTGATGCTGTGGAGTTTTGTCCACATGATCCCTACCATAATGTTTTAGCAGTATCCACTTACACATTACAAGAAGGTTCTCAGCCCTGTCGACATGGAAGCATTTCACTCTTCAATGTTGATGTGGAACCAGGTCACCTTGACATGGTTTTTAGTGAGGAAACTGCTGGGATTTTTGACATAAAGTGGAATCCACCTGGCGGGCATGCAAGTCCTTTTCTAGCTCAAGCAGATGCTGATGGATACTTGAGAATTAAAATGCTGGAGGGTTGCTGTAATGGAGTGGAAGGGGTTAATCTAAAGGAGATCACAAATGAAAAAATCAGTAACTCTATGTGCTTGTACCTGGATTGGAACCCTTCAGCCACATCCATCACAGTGGGGCTTTCTGACGGCTCTGTGTCTATTGTTTCTTTTCTTGAATCCAAGCTGGAAATTCAAGAAGAGTGGAAAGCTCATGATTATGAACTTTGGACAACCTCCTTTGATATCCACCAACCAAATTTGGTATACACTGGCTCTGATGATTGTAAATTCAGTTGTTGGGATTTGCGAGATAAACCTCCCAATGTGGTATTTCAGAGCTCTAAAGTCCACAAAATGGGTGTTTGTTGCATTGAGAAGAGTCCACATGACCCAAATACCTTGTTAACTGGCAGTTATGATGAATTCCTAAGGGTATGGGATTTAAGATCAATCTCAAAACCCCTTAATTCAATTAACTTGGGGGGAGGAGTTTGGAGGGTTAAGCACCACCCCTTCATTCCAGGCTTGGTTTTGGCTGCTTGTATGCACAATGGTTTTGCTATTGTCGCCATTAAAGGCAACAATGCCGAAGTGTCGGAAACTTACAAGAAGCATGATTCTCTTGCCTATGGAGCAGATTGGCAGAAAGGAGAAGCAAATCACATAGGTGGGAATACCAAACCACTGGTGGCTACTTGCTCATTCTACGACAAACTTGTTCGGGTGTGGAGGCCAGGAAATGATCTTATCTTGTAG

>Glyma09g09140.4   sequence type=CDS   gene model=Glyma09g09140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACATAGCACATTGCTATTTAAAGGGTAATGCTGATGCTGTGGAGTTTTGTCCACATGATCCCTACCATAATGTTTTAGCAGTATCCACTTACACATTACAAGAAGGTTCTCAGCCCTGTCGACATGGAAGCATTTCACTCTTCAATGTTGATGTGGAACCAGGTCACCTTGACATGGTTTTTAGTGAGGAAACTGCTGGGATTTTTGACATAAAGTGGAATCCACCTGGCGGGCATGCAAGTCCTTTTCTAGCTCAAGCAGATGCTGATGGATACTTGAGAATTAAAATGCTGGAGGGTTGCTGTAATGGAGTGGAAGGGGTTAATCTAAAGGAGATCACAAATGAAAAAATCAGTAACTCTATGTGCTTGTACCTGGATTGGAACCCTTCAGCCACATCCATCACAGTGGGGCTTTCTGACGGCTCTGTGTCTATTGTTTCTTTTCTTGAATCCAAGCTGGAAATTCAAGAAGAGTGGAAAGCTCATGATTATGAACTTTGGACAACCTCCTTTGATATCCACCAACCAAATTTGGTATACACTGGCTCTGATGATTGTAAATTCAGTTGTTGGGATTTGCGAGATAAACCTCCCAATGTGGTATTTCAGAGCTCTAAAGTCCACAAAATGGGTGTTTGTTGCATTGAGAAGAGTCCACATGACCCAAATACCTTGTTAACTGGCAGTTATGATGAATTCCTAAGGGTATGGGATTTAAGATCAATCTCAAAACCCCTTAATTCAATTAACTTGGGGGGAGGAGTTTGGAGGGTTAAGCACCACCCCTTCATTCCAGGCTTGGTTTTGGCTGCTTGTATGCACAATGGTTTTGCTATTGTCGCCATTAAAGGCAACAATGCCGAAGTGTCGGAAACTTACAAGAAGCATGATTCTCTTGCCTATGGAGCAGATTGGCAGAAAGGAGAAGCAAATCACATAGGTGGGAATACCAAACCACTGGTGGCTACTTGCTCATTCTACGACAAACTTGTTCGGGTGTGGAGGCCAGGAAATGATCTTATCTTGTAG

>Glyma09g09140.2   sequence type=predicted peptide   gene model=Glyma09g09140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDIAHCYLKGNADAVEFCPHDPYHNVLAVSTYTLQEGSQPCRHGSISLFNVDVEPGHLDMVFSEETAGIFDIKWNPPGGHASPFLAQADADGYLRIKMLEGCCNGVEGVNLKEITNEKISNSMCLYLDWNPSATSITVGLSDGSVSIVSFLESKLEIQEEWKAHDYELWTTSFDIHQPNLVYTGSDDCKFSCWDLRDKPPNVVFQSSKVHKMGVCCIEKSPHDPNTLLTGSYDEFLRVWDLRSISKPLNSINLGGGVWRVKHHPFIPGLVLAACMHNGFAIVAIKGNNAEVSETYKKHDSLAYGADWQKGEANHIGGNTKPLVATCSFYDKLVRVWRPGNDLIL*

>Glyma09g09140.3   sequence type=predicted peptide   gene model=Glyma09g09140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDIAHCYLKGNADAVEFCPHDPYHNVLAVSTYTLQEGSQPCRHGSISLFNVDVEPGHLDMVFSEETAGIFDIKWNPPGGHASPFLAQADADGYLRIKMLEGCCNGVEGVNLKEITNEKISNSMCLYLDWNPSATSITVGLSDGSVSIVSFLESKLEIQEEWKAHDYELWTTSFDIHQPNLVYTGSDDCKFSCWDLRDKPPNVVFQSSKVHKMGVCCIEKSPHDPNTLLTGSYDEFLRVWDLRSISKPLNSINLGGGVWRVKHHPFIPGLVLAACMHNGFAIVAIKGNNAEVSETYKKHDSLAYGADWQKGEANHIGGNTKPLVATCSFYDKLVRVWRPGNDLIL*

>Glyma09g09140.4   sequence type=predicted peptide   gene model=Glyma09g09140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDIAHCYLKGNADAVEFCPHDPYHNVLAVSTYTLQEGSQPCRHGSISLFNVDVEPGHLDMVFSEETAGIFDIKWNPPGGHASPFLAQADADGYLRIKMLEGCCNGVEGVNLKEITNEKISNSMCLYLDWNPSATSITVGLSDGSVSIVSFLESKLEIQEEWKAHDYELWTTSFDIHQPNLVYTGSDDCKFSCWDLRDKPPNVVFQSSKVHKMGVCCIEKSPHDPNTLLTGSYDEFLRVWDLRSISKPLNSINLGGGVWRVKHHPFIPGLVLAACMHNGFAIVAIKGNNAEVSETYKKHDSLAYGADWQKGEANHIGGNTKPLVATCSFYDKLVRVWRPGNDLIL*







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