Glyma09g08960 - SoyBase

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Report for Sequence Feature Glyma09g08960

Feature Type:	gene_model
Chromosome:	Gm09
Start:	8419281
stop:	8422318
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g08960

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G43270	AT	Annotation by Michelle Graham. TAIR10: Plant invertase/pectin methylesterase inhibitor superfamily \| chr3:15222402-15225124 REVERSE LENGTH=527	SoyBase	E_val: 0	ISS
GO:0006865	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid transport	SoyBase	N/A	ISS
GO:0015824	GO-bp	Annotation by Michelle Graham. GO Biological Process: proline transport	SoyBase	N/A	ISS
GO:0042545	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall modification	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0004857	GO-mf	Annotation by Michelle Graham. GO Molecular Function: enzyme inhibitor activity	SoyBase	N/A	ISS
GO:0030599	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pectinesterase activity	SoyBase	N/A	ISS
PTHR22931	Panther	PHOSPHOENOLPYRUVATE DIKINASE-RELATED	JGI		ISS
PTHR22931:SF5	Panther	METHYLESTERASE INHIBITOR-RELATED	JGI		ISS
PF01095	PFAM	Pectinesterase	JGI		ISS
PF04043	PFAM	Plant invertase/pectin methylesterase inhibitor	JGI		ISS
UniRef100_I1L1W7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Pectinesterase n=1 Tax=Glycine max RepID=I1L1W7_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1L1W7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pectinesterase n=1 Tax=Glycine max RepID=I1L1W7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g08960

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g08960

Paralog	Evidence	Comments
Glyma15g20530	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g08960 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g076600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g08960

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g08960

Limit To All Plant Sequences

>Glyma09g08960.1   sequence type=CDS   gene model=Glyma09g08960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGTTTTCTCGACCAAACAGCTGAGTACTTCAACTCTGACCACCACATTCATCATCTTCTTTGTTCGCTCTGAATTCGCGGGACTCGGTGGCCTGAGAGTTTCTCCTTCTGAATTCATAGGCTCGGTGACCACAGTAGGCGATGTTTTGCAAAACGTTACCTCCATTCTCAAGTCTGAGTTCGTCAGCAATGTCAACAATAATGAGTTTCATCTTTATGATGCCGCCGCCATTTTTGCCTGTCTCGATTTGTTAGACTTGTCAGCTGATGAACTCAGCTGGTCCATTTCCGCTGTTCAAAGTCCCCAAGGGAATGATAACAGTACTGGTAATCTGAGCTCTGATTTGAGGACATGGCTGAGCGCTGTACTAGCGAATACAGATACATGCATGGAAGATTTTGAAGGTACAAATGGTAATGTGAAGGGTTTAATATCCACAGAAATTGATCAAGCAAAGTGGTTACTCCAAAAGCTACTGACCCAGGTGAAGCCATATGTGAATGATTTCAGCAGTAGAAATAGTAGGGATAAATTTCCTTCATGGGTTGAAGCAGAGGATAAGTTGTTGCTGCAGACAAATGTGGTGTCTGCGGATGCTGTAGTTGCTGCCGATGGGACTGGGAATTTTACTAAGGTGATGGATGCTGTGGAAGCAGCACCTGTTTATAGCATGAAACGCTTTGTGATTCACATAAAGAAAGGTGTTTACACCGAGAATGTTGTGATTAAGAAGAAGAAGTGGAACCTTGTGGTGATTGGTGAGGGTATGGATGTCACTATTATCTCCGCTAATCTGAGTCGTAATGAAAATTTGACCACATTCAAGACAGCTACCTTTGCTGTGAATGGCAGAGGATTCATAGCAAAAGGCATTACCTTCAGGAACACTGCAGGACCCAAAAGAAACCAATCTGTTGCTCTAAGATCAGACTCAGACCTCTCTGTGTTCTATCGATGTGGGATTTATGGCTACCAAGACAGCCTCTACGCCCACTCCTTGCGCCAATTCTATAGAGAATGCAAAATCAGTGGCACGGTGGATTTCATATTCGGCCATGCCAATGCAGTGTTCCAAAACTGCACAATATTGGCCAAGAAAGGCTTACAAAGCCAGAAGAACACAATCACAGCTCAAGGCGAAACGTACACCGATCAATCGTCTGGTTTCACCATCCAATTCTGCAACATTTCAGCGGATTATGACCTTCTGCCCTATCTTAATACCACCTCAACGTACCTCGGAAGGCCGTGGAAGCCGTATTCTAGAACAATTTTCATGCAGTCCTACATCAGTGAGGTGTTAAATCCTAAAGGGTGGCTAGAGTGGAATGGAACAATGTATTTGGACACTTTGTACTATGCTGAGTACAAGAATTTTGGACCAGGAGCTAGGCTTGATAATAGAGTTAAATGGCCAGGGTACCATGTGATGAATGATTCTAGCCAAGCTTTTAACTTCACTGTGACCAATCTTATTTTGGGGGAACTATGGCTACCTTCAACTGGTGTAACATTCATTCCTGGACTTTGA

Predicted protein sequences of Glyma09g08960

Limit To All Plant Sequences

>Glyma09g08960.1   sequence type=predicted peptide   gene model=Glyma09g08960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVFSTKQLSTSTLTTTFIIFFVRSEFAGLGGLRVSPSEFIGSVTTVGDVLQNVTSILKSEFVSNVNNNEFHLYDAAAIFACLDLLDLSADELSWSISAVQSPQGNDNSTGNLSSDLRTWLSAVLANTDTCMEDFEGTNGNVKGLISTEIDQAKWLLQKLLTQVKPYVNDFSSRNSRDKFPSWVEAEDKLLLQTNVVSADAVVAADGTGNFTKVMDAVEAAPVYSMKRFVIHIKKGVYTENVVIKKKKWNLVVIGEGMDVTIISANLSRNENLTTFKTATFAVNGRGFIAKGITFRNTAGPKRNQSVALRSDSDLSVFYRCGIYGYQDSLYAHSLRQFYRECKISGTVDFIFGHANAVFQNCTILAKKGLQSQKNTITAQGETYTDQSSGFTIQFCNISADYDLLPYLNTTSTYLGRPWKPYSRTIFMQSYISEVLNPKGWLEWNGTMYLDTLYYAEYKNFGPGARLDNRVKWPGYHVMNDSSQAFNFTVTNLILGELWLPSTGVTFIPGL*

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