Glyma09g08866 - SoyBase

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Report for Sequence Feature Glyma09g08866

Feature Type:	gene_model
Chromosome:	Gm09
Start:	8303637
stop:	8308939
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g08866

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G34630	AT	Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (TAIR:AT5G51150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Euk	SoyBase	E_val: 5.00E-96	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR12459	Panther	UNCHARACTERIZED	JGI		ISS
UniRef100_G7IIR8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transmembrane protein n=1 Tax=Medicago truncatula RepID=G7IIR8_MEDTR	SoyBase	E_val: 1.00E-82	ISS
UniRef100_UPI000233BA5B	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233BA5B related cluster n=1 Tax=unknown RepID=UPI000233BA5B	SoyBase	E_val: 5.00E-129	ISS

Expression Patterns of Glyma09g08866

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g08866 not represented in the dataset	Glyma09g08866 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g08866

Paralog	Evidence	Comments
Glyma15g20420	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g08866 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g075600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g08866

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g08866

Limit To All Plant Sequences

>Glyma09g08866.1   sequence type=CDS   gene model=Glyma09g08866   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCGCTCCTTCGATAGTCTCGTCATCTGCGATGCGCTGCATCGTGGACGCAATTCCGTCGAAGGAGTGGGAGAAGCTCCAGAGAATCCTTTTCGTCTCGGCAAAAGATTTCTCGATCGGAGCTGGCCTCAAGGGTGGCCTCACTCTCTTCGCGATCTTGGCACGATTACATGTAAAAAGCCGCCAAGCAATTCTGGCGGCTCTGAAGGAAACACTAAGATACGGTTTGTTTCTCGAAACCTTCGTTGGAACGTTCGTTTCCACCGACGAAGTTATCGGTTCTATCGTTGATCACCACAGGCATTGGAGGGCTCTGGTAGCAGGGGCGGTTGCAGGGTCGTCGATGCTACTAATAGGGTTAGAGGATCAGCACACGAGTTTGGCCATTTACATTCTCATGCGTGCAACTCCTCTCATGTGGAAGCATGGTGACATTTTCCTCATGTGTCTATCCTTCTCACAAATATTGTATTCTGCTTATATATTAAAGCAAGACAGTTTGCCAACTTCATATAAATCCTTTCTCAATAAACATGGTGGAAAGGATCCAGTTATCTTACAAGGTGTAAAAGATATAGCCAGTGGCAAGCCTTTCACTAATTTGGGTGCAATTGAGAAATACTACAAGACCATGGGTATCGATATTGTACATGGGAATAAATCATGCAGAGGACACATTCTTTCGTTTCTTGTTCAAGCTTACCAAAGAGCACTATCTGTTTATCTTCCAGTTTACCTAATAGCTGCACTTATAGTTCACAGAAATGGACTTTTAAAAAGGTGA

Predicted protein sequences of Glyma09g08866

Limit To All Plant Sequences

>Glyma09g08866.1   sequence type=predicted peptide   gene model=Glyma09g08866   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSAPSIVSSSAMRCIVDAIPSKEWEKLQRILFVSAKDFSIGAGLKGGLTLFAILARLHVKSRQAILAALKETLRYGLFLETFVGTFVSTDEVIGSIVDHHRHWRALVAGAVAGSSMLLIGLEDQHTSLAIYILMRATPLMWKHGDIFLMCLSFSQILYSAYILKQDSLPTSYKSFLNKHGGKDPVILQGVKDIASGKPFTNLGAIEKYYKTMGIDIVHGNKSCRGHILSFLVQAYQRALSVYLPVYLIAALIVHRNGLLKR*

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