Glyma09g08830 - SoyBase

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Report for Sequence Feature Glyma09g08830

Feature Type:	gene_model
Chromosome:	Gm09
Start:	8241587
stop:	8249559
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g08830

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G79940	AT	Annotation by Michelle Graham. TAIR10: DnaJ / Sec63 Brl domains-containing protein \| chr1:30070023-30073237 FORWARD LENGTH=687	SoyBase	E_val: 0	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0030968	GO-bp	Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0030176	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to endoplasmic reticulum membrane	SoyBase	N/A	ISS
GO:0031072	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding	SoyBase	N/A	ISS
GO:0051082	GO-mf	Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding	SoyBase	N/A	ISS
KOG0721	KOG	Molecular chaperone (DnaJ superfamily)	JGI		ISS
KOG4434	KOG	Molecular chaperone SEC63, endoplasmic reticulum translocon component	JGI		ISS
PTHR24075	Panther	FAMILY NOT NAMED	JGI		ISS
PF00226	PFAM	DnaJ domain	JGI		ISS
PF02889	PFAM	Sec63 Brl domain	JGI		ISS
UniRef100_G7IIR7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chaperone protein dnaJ n=1 Tax=Medicago truncatula RepID=G7IIR7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002337D0A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337D0A related cluster n=1 Tax=unknown RepID=UPI0002337D0A	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g08830

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g08830

Paralog	Evidence	Comments
Glyma15g20400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g08830 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g075400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g08830

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g08830

Limit To All Plant Sequences

>Glyma09g08830.3   sequence type=transcript   gene model=Glyma09g08830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTGATATATTTTTATTCCTTTTATTTTAGAGGCACACAAGTACTTCGTTGAGTACATTGCCAAAGCTTATCAAGCTCTTACAGATCCAACAGCTCGTGAAAATTATGAAAAATATGGCCATCCTGATGGCAGGCAGGGATTCCAAATGGGTATAGCTCTTCCTCAATTCCTGCTAAATATTGATGGGGCATCTGGTGGAATACTTCTGCTTTGGATTGTTGGTGTGTGTATTCTCTTGCCGTTGGTCATTGCTGTTGTTTATCTCTCCAGATCATCAAAGTATACCGGCAACTATGTGATGCATCAAACACTTTCCACTTACTATTACCTTATGAAGCCTTCTTTGGCCCCCAGCAAAGTAATGGATGTCTTCATCAAGGCTGCTGAATATATGGAAATTCCAGTCCGTAGAACTGATGACGAACCTCTTCAAAAGCTTTTTATGTTGGTAAGGAGTGAGTTGAATCTTGACCTCAAAAACATCAAGCAGGAGCAGGCTAAGTTTTGGAAGCAACATCCTGCGCTGGTTAAGACAGAGCTGTTAGTTCAAGCTCAGTTGACCCGTGAATTTGCAGCTTTGTCGCCATCTTTACAAAGTGATTTCAGACAAATTTTAGAAACAGCACCCCGCCTACTTGAAGAATTAATGAAGATGGCAGTTATACCGCGAAATGCTCAGGGGCATGGATGGCTGAGGCCTGCAATTGGTGTTGTTGAGCTTTCTCAATGTATCGTCCAGGCTGTTCCTCTCAGTGCTAGAAAGTCTACTGGTGGATCACCTGAAGGAATTGCACCATTTCTGCAGTTGCCACATATAAGTGAGACTATTATTAAGAAGGTGGCCCGCAAGAAAGTGAGAACATTTCAGGAACTTCATGACATGGACTCTCAGGAGCGAGCTGACCTTCTTATTCAAACAGGTGGGTTATCTTCCGCTGAAGTGGAAGACATTGAGACGGTACTGGACATGATGCCTTCCTTGACACTTGAGGTAACTTGTGAGACTGAAGGTGAAGAGGGTATACAAGAGGGGGACATTGTGACTCTCCATGCTTGGATAAATGTTAAAAGGGGTAATAGCCTGATTGGTGCTCTTCCACATGCCCCCTACTACCCATTTCATAAGGAAGAAAACTACTGGTTTTTGCTTGCGGATTCTGTTTCAAACAACGTGTGGTTTTCTCAGAAGGTTAGTTTCATGGATGAAGCTGCTGCTGTAACTGCTGCATCTAAGGCAATTGAGGAGTCTATGGAGGGGTCAGGAGCAAATGTGAAGGAGACCAGTAAGGTAGTTGCAGAAGCAGTTGAGAAGGTGAAAGGGGGCTCTAGATTAGTATTGGGCAAGTTCCAGGCCCCATCAGAGGGTAACTACAATTTGACTTGCTATTGTTTGTGTGATTCTTGGTTGGGCTGTGACAGAAGGACAAATTTAAAGCTCAAAGTTTTGAAACGAACTCGGGCTGGCACCAGGGGTGCTGTTTTGGCTGATGAAGGACCTATCATGGAGGATGGAGTTGAGGAGGATGAGGACAACGAGGATGAAGAGTATGATGATGACTATGAGAGTGAGTACAGTGAAGATGAAGAAGATGGCCAGAACACAAAAAATAAGAAACAAGCTGTCAATGGCGCCGTGAATAAACATGGCAAAGCTGCAGAAAGTTCAGGCTCTGATGAAGAATGAGAAGTTTTTTCTAACATCACAGAATCGTAATTTTCATCTTTTTCCTTCTTGGATGGTAGAACTATCAACTTGTAGCAGTAATAGTCTAATATTGTCCATTATGTTTATCAGTTGGACAGCGTTGATGCTTGGATTTCTGTTCGTATCCTAGTTCAGCTGATATCGTGATTAAATTGTCATATCATCCGAAAATTTTTATGGTAAAAATGAGAGTAAGGATTTAATTTTTATTTAAGGCCGGTGTACAACTATTTTAAATGCTTTTATTGAGAAACTTTTGTTGAGAGTTTTAATGTCGATTATTCCATGTAACCATCTCATCTTCAAGAATTCAACTTAGTTTTGTTATTAT

Coding sequences of Glyma09g08830

Limit To All Plant Sequences

>Glyma09g08830.1   sequence type=CDS   gene model=Glyma09g08830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCTTCAGAGGAGAATAGTGCACTGTTCCCAATATTCATTTTGACAATAATGGCCATTCCTATAGTGCCATATACAATAACAAAGTTGTGCCGTTTTGCCAGTAAGAAATCAAAGAGCATTCACTGTCAGTGCTCTGAGTGCTCGCGGTCCGGGAAGTACCATAAATCGATATTCAAGAGGATTTCAAATGTCTCAACCTGTAGTAACTTGACATTGTTACTACTTTGGGTGGTTATGATTGTTCTGGTTTATTACATAAAGACCATGAGTCGTGAGATTGAAATTTTTGATCCGTTTAATATTCTAGGATTAGAGCCTGGAGCGGCAGAGTCTGAAATAAAGAAAAAGTATAGGCGACTTTCTATTCAATACCATCCAGATAAAAACCCAGATCCAGAGGCACACAAGTACTTCGTTGAGTACATTGCCAAAGCTTATCAAGCTCTTACAGATCCAACAGCTCGTGAAAATTATGAAAAATATGGCCATCCTGATGGCAGGCAGGGATTCCAAATGGGTATAGCTCTTCCTCAATTCCTGCTAAATATTGATGGGGCATCTGGTGGAATACTTCTGCTTTGGATTGTTGGTGTGTGTATTCTCTTGCCGTTGGTCATTGCTGTTGTTTATCTCTCCAGATCATCAAAGTATACCGGCAACTATGTGATGCATCAAACACTTTCCACTTACTATTACCTTATGAAGCCTTCTTTGGCCCCCAGCAAAGTAATGGATGTCTTCATCAAGGCTGCTGAATATATGGAAATTCCAGTCCGTAGAACTGATGACGAACCTCTTCAAAAGCTTTTTATGTTGGTAAGGAGTGAGTTGAATCTTGACCTCAAAAACATCAAGCAGGAGCAGGCTAAGTTTTGGAAGCAACATCCTGCGCTGGTTAAGACAGAGCTGTTAGTTCAAGCTCAGTTGACCCGTGAATTTGCAGCTTTGTCGCCATCTTTACAAAGTGATTTCAGACAAATTTTAGAAACAGCACCCCGCCTACTTGAAGAATTAATGAAGATGGCAGTTATACCGCGAAATGCTCAGGGGCATGGATGGCTGAGGCCTGCAATTGGTGTTGTTGAGCTTTCTCAATGTATCGTCCAGGCTGTTCCTCTCAGTGCTAGAAAGTCTACTGGTGGATCACCTGAAGGAATTGCACCATTTCTGCAGTTGCCACATATAAGTGAGACTATTATTAAGAAGGTGGCCCGCAAGAAAGTGAGAACATTTCAGGAACTTCATGACATGGACTCTCAGGAGCGAGCTGACCTTCTTATTCAAACAGGTGGGTTATCTTCCGCTGAAGTGGAAGACATTGAGACGGTACTGGACATGATGCCTTCCTTGACACTTGAGGTAACTTGTGAGACTGAAGGTGAAGAGGGTATACAAGAGGGGGACATTGTGACTCTCCATGCTTGGATAAATGTTAAAAGGGGTAATAGCCTGATTGGTGCTCTTCCACATGCCCCCTACTACCCATTTCATAAGGAAGAAAACTACTGGTTTTTGCTTGCGGATTCTGTTTCAAACAACGTGTGGTTTTCTCAGAAGGTTAGTTTCATGGATGAAGCTGCTGCTGTAACTGCTGCATCTAAGGCAATTGAGGAGTCTATGGAGGGGTCAGGAGCAAATGTGAAGGAGACCAGTAAGGTAGTTGCAGAAGCAGTTGAGAAGGTGAAAGGGGGCTCTAGATTAGTATTGGGCAAGTTCCAGGCCCCATCAGAGGGTAACTACAATTTGACTTGCTATTGTTTGTGTGATTCTTGGTTGGGCTGTGACAGAAGGACAAATTTAAAGCTCAAAGTTTTGAAACGAACTCGGGCTGGCACCAGGGGTGCTGTTTTGGCTGATGAAGGACCTATCATGGAGGATGGAGTTGAGGAGGATGAGGACAACGAGGATGAAGAGTATGATGATGACTATGAGAGTGAGTACAGTGAAGATGAAGAAGATGGCCAGAACACAAAAAATAAGAAACAAGCTGTCAATGGCGCCGTGAATAAACATGGCAAAGCTGCAGAAAGTTCAGGCTCTGATGAAGAATGA

>Glyma09g08830.3   sequence type=CDS   gene model=Glyma09g08830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTATAGCTCTTCCTCAATTCCTGCTAAATATTGATGGGGCATCTGGTGGAATACTTCTGCTTTGGATTGTTGGTGTGTGTATTCTCTTGCCGTTGGTCATTGCTGTTGTTTATCTCTCCAGATCATCAAAGTATACCGGCAACTATGTGATGCATCAAACACTTTCCACTTACTATTACCTTATGAAGCCTTCTTTGGCCCCCAGCAAAGTAATGGATGTCTTCATCAAGGCTGCTGAATATATGGAAATTCCAGTCCGTAGAACTGATGACGAACCTCTTCAAAAGCTTTTTATGTTGGTAAGGAGTGAGTTGAATCTTGACCTCAAAAACATCAAGCAGGAGCAGGCTAAGTTTTGGAAGCAACATCCTGCGCTGGTTAAGACAGAGCTGTTAGTTCAAGCTCAGTTGACCCGTGAATTTGCAGCTTTGTCGCCATCTTTACAAAGTGATTTCAGACAAATTTTAGAAACAGCACCCCGCCTACTTGAAGAATTAATGAAGATGGCAGTTATACCGCGAAATGCTCAGGGGCATGGATGGCTGAGGCCTGCAATTGGTGTTGTTGAGCTTTCTCAATGTATCGTCCAGGCTGTTCCTCTCAGTGCTAGAAAGTCTACTGGTGGATCACCTGAAGGAATTGCACCATTTCTGCAGTTGCCACATATAAGTGAGACTATTATTAAGAAGGTGGCCCGCAAGAAAGTGAGAACATTTCAGGAACTTCATGACATGGACTCTCAGGAGCGAGCTGACCTTCTTATTCAAACAGGTGGGTTATCTTCCGCTGAAGTGGAAGACATTGAGACGGTACTGGACATGATGCCTTCCTTGACACTTGAGGTAACTTGTGAGACTGAAGGTGAAGAGGGTATACAAGAGGGGGACATTGTGACTCTCCATGCTTGGATAAATGTTAAAAGGGGTAATAGCCTGATTGGTGCTCTTCCACATGCCCCCTACTACCCATTTCATAAGGAAGAAAACTACTGGTTTTTGCTTGCGGATTCTGTTTCAAACAACGTGTGGTTTTCTCAGAAGGTTAGTTTCATGGATGAAGCTGCTGCTGTAACTGCTGCATCTAAGGCAATTGAGGAGTCTATGGAGGGGTCAGGAGCAAATGTGAAGGAGACCAGTAAGGTAGTTGCAGAAGCAGTTGAGAAGGTGAAAGGGGGCTCTAGATTAGTATTGGGCAAGTTCCAGGCCCCATCAGAGGGTAACTACAATTTGACTTGCTATTGTTTGTGTGATTCTTGGTTGGGCTGTGACAGAAGGACAAATTTAAAGCTCAAAGTTTTGAAACGAACTCGGGCTGGCACCAGGGGTGCTGTTTTGGCTGATGAAGGACCTATCATGGAGGATGGAGTTGAGGAGGATGAGGACAACGAGGATGAAGAGTATGATGATGACTATGAGAGTGAGTACAGTGAAGATGAAGAAGATGGCCAGAACACAAAAAATAAGAAACAAGCTGTCAATGGCGCCGTGAATAAACATGGCAAAGCTGCAGAAAGTTCAGGCTCTGATGAAGAATGA

Predicted protein sequences of Glyma09g08830

Limit To All Plant Sequences

>Glyma09g08830.1   sequence type=predicted peptide   gene model=Glyma09g08830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAASEENSALFPIFILTIMAIPIVPYTITKLCRFASKKSKSIHCQCSECSRSGKYHKSIFKRISNVSTCSNLTLLLLWVVMIVLVYYIKTMSREIEIFDPFNILGLEPGAAESEIKKKYRRLSIQYHPDKNPDPEAHKYFVEYIAKAYQALTDPTARENYEKYGHPDGRQGFQMGIALPQFLLNIDGASGGILLLWIVGVCILLPLVIAVVYLSRSSKYTGNYVMHQTLSTYYYLMKPSLAPSKVMDVFIKAAEYMEIPVRRTDDEPLQKLFMLVRSELNLDLKNIKQEQAKFWKQHPALVKTELLVQAQLTREFAALSPSLQSDFRQILETAPRLLEELMKMAVIPRNAQGHGWLRPAIGVVELSQCIVQAVPLSARKSTGGSPEGIAPFLQLPHISETIIKKVARKKVRTFQELHDMDSQERADLLIQTGGLSSAEVEDIETVLDMMPSLTLEVTCETEGEEGIQEGDIVTLHAWINVKRGNSLIGALPHAPYYPFHKEENYWFLLADSVSNNVWFSQKVSFMDEAAAVTAASKAIEESMEGSGANVKETSKVVAEAVEKVKGGSRLVLGKFQAPSEGNYNLTCYCLCDSWLGCDRRTNLKLKVLKRTRAGTRGAVLADEGPIMEDGVEEDEDNEDEEYDDDYESEYSEDEEDGQNTKNKKQAVNGAVNKHGKAAESSGSDEE*

>Glyma09g08830.3   sequence type=predicted peptide   gene model=Glyma09g08830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGIALPQFLLNIDGASGGILLLWIVGVCILLPLVIAVVYLSRSSKYTGNYVMHQTLSTYYYLMKPSLAPSKVMDVFIKAAEYMEIPVRRTDDEPLQKLFMLVRSELNLDLKNIKQEQAKFWKQHPALVKTELLVQAQLTREFAALSPSLQSDFRQILETAPRLLEELMKMAVIPRNAQGHGWLRPAIGVVELSQCIVQAVPLSARKSTGGSPEGIAPFLQLPHISETIIKKVARKKVRTFQELHDMDSQERADLLIQTGGLSSAEVEDIETVLDMMPSLTLEVTCETEGEEGIQEGDIVTLHAWINVKRGNSLIGALPHAPYYPFHKEENYWFLLADSVSNNVWFSQKVSFMDEAAAVTAASKAIEESMEGSGANVKETSKVVAEAVEKVKGGSRLVLGKFQAPSEGNYNLTCYCLCDSWLGCDRRTNLKLKVLKRTRAGTRGAVLADEGPIMEDGVEEDEDNEDEEYDDDYESEYSEDEEDGQNTKNKKQAVNGAVNKHGKAAESSGSDEE*

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