SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G53690 | AT | Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr3:19898997-19900044 REVERSE LENGTH=320 | SoyBase | E_val: 1.00E-94 | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PTHR11685 | Panther | ARIADNE RING ZINC FINGER | JGI | ISS | |
| PTHR11685:SF66 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF01485 | PFAM | IBR domain | JGI | ISS | |
| UniRef100_D7LUL3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LUL3_ARALL | SoyBase | E_val: 5.00E-94 | ISS |
| UniRef100_I1L1V3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L1V3_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma09g08670 not represented in the dataset |
Glyma09g08670 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g20350 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g074200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g08670.2 sequence type=transcript gene model=Glyma09g08670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTGAAATCAAACTAAATTCACACACATTCCTACTTTGTTACAATCTTATTTGGTTCTCAGTCCACTTTTAGATTACTTATGGTTCATTTTCCCTAATAGGTGAGGCTTAAGAAAAAATAAAAAAGAGAATTTGTGGGAATCCAATCAGAATATGGGTTCAGAGATACGTGTTTCATAAGCAAGTTGGAGAAAGTGGTCAGTGGAGAGTGAGAAGTAGTCACTGAACCATCAACGTCGGAAACCGAATCCGAAACCAAAAACGGTTCCAAATGTTGAACCCCGAACCGCCGCCGCCGCCGCCGCCGATGATGGTTCCGCCGGCGACGCCGATGAACCGCGAAACGACGTCGCTAAGGAAGAAGAACAGACTCCGAACTCGAACTCGAATTCCACCTTTCGACGTGGACTCCTCCTTCTTCACCACGCCGATCTCCTTGCAAGGCACCACAAAATCAAACGCGATCTCCGTGGAGCAATACGACGGCGTTTCCGCTTCCGCTTCCAGCCCCGTCCACGTCATCAACCTCTCTGATACCGAGGACGACGACGAAGTCCGAATCCTCAACTTCACTCCCATAAACACGTCCTTCGGAAAACGCAGCAAGAAATCATCATCCAAAGGAGAGTGCTCCAACTCCGCATCGTTCGTCTGCGAAATCTGCACCGAAACGAAAACCGCCAGAGACTCCTTCTCGATCATCGGATGCCACCACGTGTACTGCAACTCCTGCGTGGCGCAGTACGTCGAATCGAAGCTCGAAGAGAACATCGTTAGCATCCCCTGCCCCGTGCCGGGATGCAGGGGACTACTGGAGGCTGATGATTGCCGTGAAATTCTCGCGCCTCGCGTCTTCGATCGGTGGGGAAAAGCCTTATGCGAGGCTGTGATTGCTGCTGAAGAAAAATTCTATTGTCCCTTTGCGGATTGTTCTGTTATGTTGATTAGAGGGATCGAGGAAAACAATATCAGAGAAGCTGAGTGTCCTAACTGTAGGAGGCTTTTCTGTGCGCAGTGTAGGGTGCCCTGGCACGATAATATGCCCTGCGAGGACTTTCAGAAGCTGAACGCGGACGAGAGGGATAAGGAGGATATCATGCTGATGAACCTCGCCAATCAAATGCAGTGGAAGAGGTGCCCCCGGTGTAGGTTCTACGTCGCCAAATCGGATGGATGCATGTACATGAAATGCAGGGGAAAGACGCAGAAGCAGCTGCTTTTGCTGATCCACTATCGAAAGGTAGCCAGTGTTTACTAAATACCCACTGGTGTGGAAACGCCTTCTGTTACAACTGTGGAGCTCCCAACTTAACCAGCTCCCATAGTTGCAGCTATTGTTTTCGTTAATGATATTATGGAACCAAAAGAGGATTTGAACAAATTACTTCATGCAAACTACCTAAACTCATCCCAAACACCCCACACCTAGTGACTTTATTTATGCATTAACATTATTCAGTATAGCTTATAACTATTTAGCCTTTTCAAGTATGAGAACAATTTCAAAATCTGTTTGCAGTATATGACTTTATGAATGCATAATAATGGCTATGTATCTTTAGCCGCAATACGGTTTATTTTCTTTTATTTATTTATTTATTTTACCTTAGTAAGCATATAGTAGTAGTGGTTAAAAATTGCCTAAAAACAGAGTAACAGGTTGATAGCGTTTTAATGTA >Glyma09g08670.3 sequence type=transcript gene model=Glyma09g08670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTGAAATCAAACTAAATTCACACACATTCCTACTTTGTTACAATCTTATTTGGTTCTCAGTCCACTTTTAGATTACTTATGGTTCATTTTCCCTAATAGGTGAGGCTTAAGAAAAAATAAAAAAGAGAATTTGTGGGAATCCAATCAGAATATGGGTTCAGAGATACGTGTTTCATAAGCAAGTTGGAGAAAGTGGTCAGTGGAGAGTGAGAAGTAGTCACTGAACCATCAACGTCGGAAACCGAATCCGAAACCAAAAACGGTTCCAAATGTTGAACCCCGAACCGCCGCCGCCGCCGCCGCCGATGATGGTTCCGCCGGCGACGCCGATGAACCGCGAAACGACGTCGCTAAGGAAGAAGAACAGACTCCGAACTCGAACTCGAATTCCACCTTTCGACGTGGACTCCTCCTTCTTCACCACGCCGATCTCCTTGCAAGGCACCACAAAATCAAACGCGATCTCCGTGGAGCAATACGACGGCGTTTCCGCTTCCGCTTCCAGCCCCGTCCACGTCATCAACCTCTCTGATACCGAGGACGACGACGAAGTCCGAATCCTCAACTTCACTCCCATAAACACGTCCTTCGGAAAACGCAGCAAGAAATCATCATCCAAAGGAGAGTGCTCCAACTCCGCATCGTTCGTCTGCGAAATCTGCACCGAAACGAAAACCGCCAGAGACTCCTTCTCGATCATCGGATGCCACCACGTGTACTGCAACTCCTGCGTGGCGCAGTACGTCGAATCGAAGCTCGAAGAGAACATCGTTAGCATCCCCTGCCCCGTGCCGGGATGCAGGGGACTACTGGAGGCTGATGATTGCCGTGAAATTCTCGCGCCTCGCGTCTTCGATCGGTGGGGAAAAGCCTTATGCGAGGCTGTGATTGCTGCTGAAGAAAAATTCTATTGTCCCTTTGCGGATTGTTCTGTTATGTTGATTAGAGGGATCGAGGAAAACAATATCAGAGAAGCTGAGTGTCCTAACTGTAGGAGGCTTTTCTGTGCGCAGTGTAGGGTGCCCTGGCACGATAATATGCCCTGCGAGGACTTTCAGAAGCTGAACGCGGACGAGAGGGATAAGGAGGATATCATGCTGATGAACCTCGCCAATCAAATGCAGTGGAAGAGGTGCCCCCGGTGTAGGTTCTACGTCGCCAAATCGGATGGATGCATGTACATGAAATGCAGGGGAAAGACGCAGAAGCAGCTGCTTTTGCTGATCCACTATCGAAAGGTAGCCAGTGTTTACTAAATACCCACTGGTAATTTCAGGATTTCGAAATTTTCTTTTAACATTTGCGGTTGCTCTGTTTAGGTTTCACTTCTTTTAGCTTTGTTTTCATGTGGTTGATATTAAGAACCAGGGCTATTGATGAGTCTGTTTTGCATTCTTCATTTTACCCTTTTACTCATAGCCATGGTTTTAAATTGGGGATGCAGTCGTGTTAGCGGACTAGTGGTTTTGTCGCAATTCTTAACATTGTGGGAAATTGTAGGAGTATGCGGTTGATGCAGCCGCAAATGCAGACGCAGTTGCAACGCGTCAAAAAACCTTTACAACGTGGGCACACTTGTGTTTGTGGACCACAATTTAAAACCATGCTCAACAGCTCAAGACTTCAATGCCTTTTGGCTTTGCAATCTTCCATGGCACATTCCAGCTCGTATAATAGTCATCATCCACATAATCTTCCAAAGTGTGGAAACGCCTTCTGTTACAACTGTGGAGCTCCCAACTTAACCAGCTCCCATAGTTGCAGCTATTGTTTTCGTTAATGATATTATGGAACCAAAAGAGGATTTGAACAAATTACTTCATGCAAACTACCTAAACTCATCCCAAACACCCCACACCTAGTGACTTTATTTATGCATTAACATTATTCAGTATAGCTTATAACTATTTAGCCTTTTCAAGTATGAGAACAATTTCAAAATCTGTTTGCAGTATATGACTTTATGAATGCATAATAATGGCTATGTATCTTTAGCCGCAATACGGTTTATTTTCTTTTATTTATTTATTTATTTTACCTTAGTAAGCATATAGTAGTAGTGGTTAAAAATTGCCTAAAAACAGAGTAACAGGTTGATAGCGTTTTAATGTA
>Glyma09g08670.1 sequence type=CDS gene model=Glyma09g08670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTGAACCCCGAACCGCCGCCGCCGCCGCCGCCGATGATGGTTCCGCCGGCGACGCCGATGAACCGCGAAACGACGTCGCTAAGGAAGAAGAACAGACTCCGAACTCGAACTCGAATTCCACCTTTCGACGTGGACTCCTCCTTCTTCACCACGCCGATCTCCTTGCAAGGCACCACAAAATCAAACGCGATCTCCGTGGAGCAATACGACGGCGTTTCCGCTTCCGCTTCCAGCCCCGTCCACGTCATCAACCTCTCTGATACCGAGGACGACGACGAAGTCCGAATCCTCAACTTCACTCCCATAAACACGTCCTTCGGAAAACGCAGCAAGAAATCATCATCCAAAGGAGAGTGCTCCAACTCCGCATCGTTCGTCTGCGAAATCTGCACCGAAACGAAAACCGCCAGAGACTCCTTCTCGATCATCGGATGCCACCACGTGTACTGCAACTCCTGCGTGGCGCAGTACGTCGAATCGAAGCTCGAAGAGAACATCGTTAGCATCCCCTGCCCCGTGCCGGGATGCAGGGGACTACTGGAGGCTGATGATTGCCGTGAAATTCTCGCGCCTCGCGTCTTCGATCGGTGGGGAAAAGCCTTATGCGAGGCTGTGATTGCTGCTGAAGAAAAATTCTATTGTCCCTTTGCGGATTGTTCTGTTATGTTGATTAGAGGGATCGAGGAAAACAATATCAGAGAAGCTGAGTGTCCTAACTGTAGGAGGCTTTTCTGTGCGCAGTGTAGGGTGCCCTGGCACGATAATATGCCCTGCGAGGACTTTCAGAAGCTGAACGCGGACGAGAGGGATAAGGAGGATATCATGCTGATGAACCTCGCCAATCAAATGCAGTGGAAGAGGTGCCCCCGGTGTAGGTTCTACGTCGCCAAATCGGATGGATGCATGTACATGAAATGCAGGTGTGGAAACGCCTTCTGTTACAACTGTGGAGCTCCCAACTTAACCAGCTCCCATAGTTGCAGCTATTGTTTTCGTTAA >Glyma09g08670.2 sequence type=CDS gene model=Glyma09g08670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTGAACCCCGAACCGCCGCCGCCGCCGCCGCCGATGATGGTTCCGCCGGCGACGCCGATGAACCGCGAAACGACGTCGCTAAGGAAGAAGAACAGACTCCGAACTCGAACTCGAATTCCACCTTTCGACGTGGACTCCTCCTTCTTCACCACGCCGATCTCCTTGCAAGGCACCACAAAATCAAACGCGATCTCCGTGGAGCAATACGACGGCGTTTCCGCTTCCGCTTCCAGCCCCGTCCACGTCATCAACCTCTCTGATACCGAGGACGACGACGAAGTCCGAATCCTCAACTTCACTCCCATAAACACGTCCTTCGGAAAACGCAGCAAGAAATCATCATCCAAAGGAGAGTGCTCCAACTCCGCATCGTTCGTCTGCGAAATCTGCACCGAAACGAAAACCGCCAGAGACTCCTTCTCGATCATCGGATGCCACCACGTGTACTGCAACTCCTGCGTGGCGCAGTACGTCGAATCGAAGCTCGAAGAGAACATCGTTAGCATCCCCTGCCCCGTGCCGGGATGCAGGGGACTACTGGAGGCTGATGATTGCCGTGAAATTCTCGCGCCTCGCGTCTTCGATCGGTGGGGAAAAGCCTTATGCGAGGCTGTGATTGCTGCTGAAGAAAAATTCTATTGTCCCTTTGCGGATTGTTCTGTTATGTTGATTAGAGGGATCGAGGAAAACAATATCAGAGAAGCTGAGTGTCCTAACTGTAGGAGGCTTTTCTGTGCGCAGTGTAGGGTGCCCTGGCACGATAATATGCCCTGCGAGGACTTTCAGAAGCTGAACGCGGACGAGAGGGATAAGGAGGATATCATGCTGATGAACCTCGCCAATCAAATGCAGTGGAAGAGGTGCCCCCGGTGTAGGTTCTACGTCGCCAAATCGGATGGATGCATGTACATGAAATGCAGGGGAAAGACGCAGAAGCAGCTGCTTTTGCTGATCCACTATCGAAAGGTAGCCAGTGTTTACTAA >Glyma09g08670.3 sequence type=CDS gene model=Glyma09g08670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTGAACCCCGAACCGCCGCCGCCGCCGCCGCCGATGATGGTTCCGCCGGCGACGCCGATGAACCGCGAAACGACGTCGCTAAGGAAGAAGAACAGACTCCGAACTCGAACTCGAATTCCACCTTTCGACGTGGACTCCTCCTTCTTCACCACGCCGATCTCCTTGCAAGGCACCACAAAATCAAACGCGATCTCCGTGGAGCAATACGACGGCGTTTCCGCTTCCGCTTCCAGCCCCGTCCACGTCATCAACCTCTCTGATACCGAGGACGACGACGAAGTCCGAATCCTCAACTTCACTCCCATAAACACGTCCTTCGGAAAACGCAGCAAGAAATCATCATCCAAAGGAGAGTGCTCCAACTCCGCATCGTTCGTCTGCGAAATCTGCACCGAAACGAAAACCGCCAGAGACTCCTTCTCGATCATCGGATGCCACCACGTGTACTGCAACTCCTGCGTGGCGCAGTACGTCGAATCGAAGCTCGAAGAGAACATCGTTAGCATCCCCTGCCCCGTGCCGGGATGCAGGGGACTACTGGAGGCTGATGATTGCCGTGAAATTCTCGCGCCTCGCGTCTTCGATCGGTGGGGAAAAGCCTTATGCGAGGCTGTGATTGCTGCTGAAGAAAAATTCTATTGTCCCTTTGCGGATTGTTCTGTTATGTTGATTAGAGGGATCGAGGAAAACAATATCAGAGAAGCTGAGTGTCCTAACTGTAGGAGGCTTTTCTGTGCGCAGTGTAGGGTGCCCTGGCACGATAATATGCCCTGCGAGGACTTTCAGAAGCTGAACGCGGACGAGAGGGATAAGGAGGATATCATGCTGATGAACCTCGCCAATCAAATGCAGTGGAAGAGGTGCCCCCGGTGTAGGTTCTACGTCGCCAAATCGGATGGATGCATGTACATGAAATGCAGGGGAAAGACGCAGAAGCAGCTGCTTTTGCTGATCCACTATCGAAAGGTAGCCAGTGTTTACTAA
>Glyma09g08670.1 sequence type=predicted peptide gene model=Glyma09g08670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLNPEPPPPPPPMMVPPATPMNRETTSLRKKNRLRTRTRIPPFDVDSSFFTTPISLQGTTKSNAISVEQYDGVSASASSPVHVINLSDTEDDDEVRILNFTPINTSFGKRSKKSSSKGECSNSASFVCEICTETKTARDSFSIIGCHHVYCNSCVAQYVESKLEENIVSIPCPVPGCRGLLEADDCREILAPRVFDRWGKALCEAVIAAEEKFYCPFADCSVMLIRGIEENNIREAECPNCRRLFCAQCRVPWHDNMPCEDFQKLNADERDKEDIMLMNLANQMQWKRCPRCRFYVAKSDGCMYMKCRCGNAFCYNCGAPNLTSSHSCSYCFR* >Glyma09g08670.2 sequence type=predicted peptide gene model=Glyma09g08670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLNPEPPPPPPPMMVPPATPMNRETTSLRKKNRLRTRTRIPPFDVDSSFFTTPISLQGTTKSNAISVEQYDGVSASASSPVHVINLSDTEDDDEVRILNFTPINTSFGKRSKKSSSKGECSNSASFVCEICTETKTARDSFSIIGCHHVYCNSCVAQYVESKLEENIVSIPCPVPGCRGLLEADDCREILAPRVFDRWGKALCEAVIAAEEKFYCPFADCSVMLIRGIEENNIREAECPNCRRLFCAQCRVPWHDNMPCEDFQKLNADERDKEDIMLMNLANQMQWKRCPRCRFYVAKSDGCMYMKCRGKTQKQLLLLIHYRKVASVY* >Glyma09g08670.3 sequence type=predicted peptide gene model=Glyma09g08670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLNPEPPPPPPPMMVPPATPMNRETTSLRKKNRLRTRTRIPPFDVDSSFFTTPISLQGTTKSNAISVEQYDGVSASASSPVHVINLSDTEDDDEVRILNFTPINTSFGKRSKKSSSKGECSNSASFVCEICTETKTARDSFSIIGCHHVYCNSCVAQYVESKLEENIVSIPCPVPGCRGLLEADDCREILAPRVFDRWGKALCEAVIAAEEKFYCPFADCSVMLIRGIEENNIREAECPNCRRLFCAQCRVPWHDNMPCEDFQKLNADERDKEDIMLMNLANQMQWKRCPRCRFYVAKSDGCMYMKCRGKTQKQLLLLIHYRKVASVY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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