Glyma09g08670 - SoyBase

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Report for Sequence Feature Glyma09g08670

Feature Type:	gene_model
Chromosome:	Gm09
Start:	8010606
stop:	8013496
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g08670

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G53690	AT	Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein \| chr3:19898997-19900044 REVERSE LENGTH=320	SoyBase	E_val: 1.00E-94	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR11685	Panther	ARIADNE RING ZINC FINGER	JGI		ISS
PTHR11685:SF66	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01485	PFAM	IBR domain	JGI		ISS
UniRef100_D7LUL3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LUL3_ARALL	SoyBase	E_val: 5.00E-94	ISS
UniRef100_I1L1V3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L1V3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g08670

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g08670

Paralog	Evidence	Comments
Glyma15g20350	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g08670 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g074200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g08670

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g08670

Limit To All Plant Sequences

>Glyma09g08670.2   sequence type=transcript   gene model=Glyma09g08670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGAAATCAAACTAAATTCACACACATTCCTACTTTGTTACAATCTTATTTGGTTCTCAGTCCACTTTTAGATTACTTATGGTTCATTTTCCCTAATAGGTGAGGCTTAAGAAAAAATAAAAAAGAGAATTTGTGGGAATCCAATCAGAATATGGGTTCAGAGATACGTGTTTCATAAGCAAGTTGGAGAAAGTGGTCAGTGGAGAGTGAGAAGTAGTCACTGAACCATCAACGTCGGAAACCGAATCCGAAACCAAAAACGGTTCCAAATGTTGAACCCCGAACCGCCGCCGCCGCCGCCGCCGATGATGGTTCCGCCGGCGACGCCGATGAACCGCGAAACGACGTCGCTAAGGAAGAAGAACAGACTCCGAACTCGAACTCGAATTCCACCTTTCGACGTGGACTCCTCCTTCTTCACCACGCCGATCTCCTTGCAAGGCACCACAAAATCAAACGCGATCTCCGTGGAGCAATACGACGGCGTTTCCGCTTCCGCTTCCAGCCCCGTCCACGTCATCAACCTCTCTGATACCGAGGACGACGACGAAGTCCGAATCCTCAACTTCACTCCCATAAACACGTCCTTCGGAAAACGCAGCAAGAAATCATCATCCAAAGGAGAGTGCTCCAACTCCGCATCGTTCGTCTGCGAAATCTGCACCGAAACGAAAACCGCCAGAGACTCCTTCTCGATCATCGGATGCCACCACGTGTACTGCAACTCCTGCGTGGCGCAGTACGTCGAATCGAAGCTCGAAGAGAACATCGTTAGCATCCCCTGCCCCGTGCCGGGATGCAGGGGACTACTGGAGGCTGATGATTGCCGTGAAATTCTCGCGCCTCGCGTCTTCGATCGGTGGGGAAAAGCCTTATGCGAGGCTGTGATTGCTGCTGAAGAAAAATTCTATTGTCCCTTTGCGGATTGTTCTGTTATGTTGATTAGAGGGATCGAGGAAAACAATATCAGAGAAGCTGAGTGTCCTAACTGTAGGAGGCTTTTCTGTGCGCAGTGTAGGGTGCCCTGGCACGATAATATGCCCTGCGAGGACTTTCAGAAGCTGAACGCGGACGAGAGGGATAAGGAGGATATCATGCTGATGAACCTCGCCAATCAAATGCAGTGGAAGAGGTGCCCCCGGTGTAGGTTCTACGTCGCCAAATCGGATGGATGCATGTACATGAAATGCAGGGGAAAGACGCAGAAGCAGCTGCTTTTGCTGATCCACTATCGAAAGGTAGCCAGTGTTTACTAAATACCCACTGGTGTGGAAACGCCTTCTGTTACAACTGTGGAGCTCCCAACTTAACCAGCTCCCATAGTTGCAGCTATTGTTTTCGTTAATGATATTATGGAACCAAAAGAGGATTTGAACAAATTACTTCATGCAAACTACCTAAACTCATCCCAAACACCCCACACCTAGTGACTTTATTTATGCATTAACATTATTCAGTATAGCTTATAACTATTTAGCCTTTTCAAGTATGAGAACAATTTCAAAATCTGTTTGCAGTATATGACTTTATGAATGCATAATAATGGCTATGTATCTTTAGCCGCAATACGGTTTATTTTCTTTTATTTATTTATTTATTTTACCTTAGTAAGCATATAGTAGTAGTGGTTAAAAATTGCCTAAAAACAGAGTAACAGGTTGATAGCGTTTTAATGTA

>Glyma09g08670.3   sequence type=transcript   gene model=Glyma09g08670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGAAATCAAACTAAATTCACACACATTCCTACTTTGTTACAATCTTATTTGGTTCTCAGTCCACTTTTAGATTACTTATGGTTCATTTTCCCTAATAGGTGAGGCTTAAGAAAAAATAAAAAAGAGAATTTGTGGGAATCCAATCAGAATATGGGTTCAGAGATACGTGTTTCATAAGCAAGTTGGAGAAAGTGGTCAGTGGAGAGTGAGAAGTAGTCACTGAACCATCAACGTCGGAAACCGAATCCGAAACCAAAAACGGTTCCAAATGTTGAACCCCGAACCGCCGCCGCCGCCGCCGCCGATGATGGTTCCGCCGGCGACGCCGATGAACCGCGAAACGACGTCGCTAAGGAAGAAGAACAGACTCCGAACTCGAACTCGAATTCCACCTTTCGACGTGGACTCCTCCTTCTTCACCACGCCGATCTCCTTGCAAGGCACCACAAAATCAAACGCGATCTCCGTGGAGCAATACGACGGCGTTTCCGCTTCCGCTTCCAGCCCCGTCCACGTCATCAACCTCTCTGATACCGAGGACGACGACGAAGTCCGAATCCTCAACTTCACTCCCATAAACACGTCCTTCGGAAAACGCAGCAAGAAATCATCATCCAAAGGAGAGTGCTCCAACTCCGCATCGTTCGTCTGCGAAATCTGCACCGAAACGAAAACCGCCAGAGACTCCTTCTCGATCATCGGATGCCACCACGTGTACTGCAACTCCTGCGTGGCGCAGTACGTCGAATCGAAGCTCGAAGAGAACATCGTTAGCATCCCCTGCCCCGTGCCGGGATGCAGGGGACTACTGGAGGCTGATGATTGCCGTGAAATTCTCGCGCCTCGCGTCTTCGATCGGTGGGGAAAAGCCTTATGCGAGGCTGTGATTGCTGCTGAAGAAAAATTCTATTGTCCCTTTGCGGATTGTTCTGTTATGTTGATTAGAGGGATCGAGGAAAACAATATCAGAGAAGCTGAGTGTCCTAACTGTAGGAGGCTTTTCTGTGCGCAGTGTAGGGTGCCCTGGCACGATAATATGCCCTGCGAGGACTTTCAGAAGCTGAACGCGGACGAGAGGGATAAGGAGGATATCATGCTGATGAACCTCGCCAATCAAATGCAGTGGAAGAGGTGCCCCCGGTGTAGGTTCTACGTCGCCAAATCGGATGGATGCATGTACATGAAATGCAGGGGAAAGACGCAGAAGCAGCTGCTTTTGCTGATCCACTATCGAAAGGTAGCCAGTGTTTACTAAATACCCACTGGTAATTTCAGGATTTCGAAATTTTCTTTTAACATTTGCGGTTGCTCTGTTTAGGTTTCACTTCTTTTAGCTTTGTTTTCATGTGGTTGATATTAAGAACCAGGGCTATTGATGAGTCTGTTTTGCATTCTTCATTTTACCCTTTTACTCATAGCCATGGTTTTAAATTGGGGATGCAGTCGTGTTAGCGGACTAGTGGTTTTGTCGCAATTCTTAACATTGTGGGAAATTGTAGGAGTATGCGGTTGATGCAGCCGCAAATGCAGACGCAGTTGCAACGCGTCAAAAAACCTTTACAACGTGGGCACACTTGTGTTTGTGGACCACAATTTAAAACCATGCTCAACAGCTCAAGACTTCAATGCCTTTTGGCTTTGCAATCTTCCATGGCACATTCCAGCTCGTATAATAGTCATCATCCACATAATCTTCCAAAGTGTGGAAACGCCTTCTGTTACAACTGTGGAGCTCCCAACTTAACCAGCTCCCATAGTTGCAGCTATTGTTTTCGTTAATGATATTATGGAACCAAAAGAGGATTTGAACAAATTACTTCATGCAAACTACCTAAACTCATCCCAAACACCCCACACCTAGTGACTTTATTTATGCATTAACATTATTCAGTATAGCTTATAACTATTTAGCCTTTTCAAGTATGAGAACAATTTCAAAATCTGTTTGCAGTATATGACTTTATGAATGCATAATAATGGCTATGTATCTTTAGCCGCAATACGGTTTATTTTCTTTTATTTATTTATTTATTTTACCTTAGTAAGCATATAGTAGTAGTGGTTAAAAATTGCCTAAAAACAGAGTAACAGGTTGATAGCGTTTTAATGTA

Coding sequences of Glyma09g08670

Limit To All Plant Sequences

>Glyma09g08670.1   sequence type=CDS   gene model=Glyma09g08670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGAACCCCGAACCGCCGCCGCCGCCGCCGCCGATGATGGTTCCGCCGGCGACGCCGATGAACCGCGAAACGACGTCGCTAAGGAAGAAGAACAGACTCCGAACTCGAACTCGAATTCCACCTTTCGACGTGGACTCCTCCTTCTTCACCACGCCGATCTCCTTGCAAGGCACCACAAAATCAAACGCGATCTCCGTGGAGCAATACGACGGCGTTTCCGCTTCCGCTTCCAGCCCCGTCCACGTCATCAACCTCTCTGATACCGAGGACGACGACGAAGTCCGAATCCTCAACTTCACTCCCATAAACACGTCCTTCGGAAAACGCAGCAAGAAATCATCATCCAAAGGAGAGTGCTCCAACTCCGCATCGTTCGTCTGCGAAATCTGCACCGAAACGAAAACCGCCAGAGACTCCTTCTCGATCATCGGATGCCACCACGTGTACTGCAACTCCTGCGTGGCGCAGTACGTCGAATCGAAGCTCGAAGAGAACATCGTTAGCATCCCCTGCCCCGTGCCGGGATGCAGGGGACTACTGGAGGCTGATGATTGCCGTGAAATTCTCGCGCCTCGCGTCTTCGATCGGTGGGGAAAAGCCTTATGCGAGGCTGTGATTGCTGCTGAAGAAAAATTCTATTGTCCCTTTGCGGATTGTTCTGTTATGTTGATTAGAGGGATCGAGGAAAACAATATCAGAGAAGCTGAGTGTCCTAACTGTAGGAGGCTTTTCTGTGCGCAGTGTAGGGTGCCCTGGCACGATAATATGCCCTGCGAGGACTTTCAGAAGCTGAACGCGGACGAGAGGGATAAGGAGGATATCATGCTGATGAACCTCGCCAATCAAATGCAGTGGAAGAGGTGCCCCCGGTGTAGGTTCTACGTCGCCAAATCGGATGGATGCATGTACATGAAATGCAGGTGTGGAAACGCCTTCTGTTACAACTGTGGAGCTCCCAACTTAACCAGCTCCCATAGTTGCAGCTATTGTTTTCGTTAA

>Glyma09g08670.2   sequence type=CDS   gene model=Glyma09g08670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGAACCCCGAACCGCCGCCGCCGCCGCCGCCGATGATGGTTCCGCCGGCGACGCCGATGAACCGCGAAACGACGTCGCTAAGGAAGAAGAACAGACTCCGAACTCGAACTCGAATTCCACCTTTCGACGTGGACTCCTCCTTCTTCACCACGCCGATCTCCTTGCAAGGCACCACAAAATCAAACGCGATCTCCGTGGAGCAATACGACGGCGTTTCCGCTTCCGCTTCCAGCCCCGTCCACGTCATCAACCTCTCTGATACCGAGGACGACGACGAAGTCCGAATCCTCAACTTCACTCCCATAAACACGTCCTTCGGAAAACGCAGCAAGAAATCATCATCCAAAGGAGAGTGCTCCAACTCCGCATCGTTCGTCTGCGAAATCTGCACCGAAACGAAAACCGCCAGAGACTCCTTCTCGATCATCGGATGCCACCACGTGTACTGCAACTCCTGCGTGGCGCAGTACGTCGAATCGAAGCTCGAAGAGAACATCGTTAGCATCCCCTGCCCCGTGCCGGGATGCAGGGGACTACTGGAGGCTGATGATTGCCGTGAAATTCTCGCGCCTCGCGTCTTCGATCGGTGGGGAAAAGCCTTATGCGAGGCTGTGATTGCTGCTGAAGAAAAATTCTATTGTCCCTTTGCGGATTGTTCTGTTATGTTGATTAGAGGGATCGAGGAAAACAATATCAGAGAAGCTGAGTGTCCTAACTGTAGGAGGCTTTTCTGTGCGCAGTGTAGGGTGCCCTGGCACGATAATATGCCCTGCGAGGACTTTCAGAAGCTGAACGCGGACGAGAGGGATAAGGAGGATATCATGCTGATGAACCTCGCCAATCAAATGCAGTGGAAGAGGTGCCCCCGGTGTAGGTTCTACGTCGCCAAATCGGATGGATGCATGTACATGAAATGCAGGGGAAAGACGCAGAAGCAGCTGCTTTTGCTGATCCACTATCGAAAGGTAGCCAGTGTTTACTAA

>Glyma09g08670.3   sequence type=CDS   gene model=Glyma09g08670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGAACCCCGAACCGCCGCCGCCGCCGCCGCCGATGATGGTTCCGCCGGCGACGCCGATGAACCGCGAAACGACGTCGCTAAGGAAGAAGAACAGACTCCGAACTCGAACTCGAATTCCACCTTTCGACGTGGACTCCTCCTTCTTCACCACGCCGATCTCCTTGCAAGGCACCACAAAATCAAACGCGATCTCCGTGGAGCAATACGACGGCGTTTCCGCTTCCGCTTCCAGCCCCGTCCACGTCATCAACCTCTCTGATACCGAGGACGACGACGAAGTCCGAATCCTCAACTTCACTCCCATAAACACGTCCTTCGGAAAACGCAGCAAGAAATCATCATCCAAAGGAGAGTGCTCCAACTCCGCATCGTTCGTCTGCGAAATCTGCACCGAAACGAAAACCGCCAGAGACTCCTTCTCGATCATCGGATGCCACCACGTGTACTGCAACTCCTGCGTGGCGCAGTACGTCGAATCGAAGCTCGAAGAGAACATCGTTAGCATCCCCTGCCCCGTGCCGGGATGCAGGGGACTACTGGAGGCTGATGATTGCCGTGAAATTCTCGCGCCTCGCGTCTTCGATCGGTGGGGAAAAGCCTTATGCGAGGCTGTGATTGCTGCTGAAGAAAAATTCTATTGTCCCTTTGCGGATTGTTCTGTTATGTTGATTAGAGGGATCGAGGAAAACAATATCAGAGAAGCTGAGTGTCCTAACTGTAGGAGGCTTTTCTGTGCGCAGTGTAGGGTGCCCTGGCACGATAATATGCCCTGCGAGGACTTTCAGAAGCTGAACGCGGACGAGAGGGATAAGGAGGATATCATGCTGATGAACCTCGCCAATCAAATGCAGTGGAAGAGGTGCCCCCGGTGTAGGTTCTACGTCGCCAAATCGGATGGATGCATGTACATGAAATGCAGGGGAAAGACGCAGAAGCAGCTGCTTTTGCTGATCCACTATCGAAAGGTAGCCAGTGTTTACTAA

Predicted protein sequences of Glyma09g08670

Limit To All Plant Sequences

>Glyma09g08670.1   sequence type=predicted peptide   gene model=Glyma09g08670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLNPEPPPPPPPMMVPPATPMNRETTSLRKKNRLRTRTRIPPFDVDSSFFTTPISLQGTTKSNAISVEQYDGVSASASSPVHVINLSDTEDDDEVRILNFTPINTSFGKRSKKSSSKGECSNSASFVCEICTETKTARDSFSIIGCHHVYCNSCVAQYVESKLEENIVSIPCPVPGCRGLLEADDCREILAPRVFDRWGKALCEAVIAAEEKFYCPFADCSVMLIRGIEENNIREAECPNCRRLFCAQCRVPWHDNMPCEDFQKLNADERDKEDIMLMNLANQMQWKRCPRCRFYVAKSDGCMYMKCRCGNAFCYNCGAPNLTSSHSCSYCFR*

>Glyma09g08670.2   sequence type=predicted peptide   gene model=Glyma09g08670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLNPEPPPPPPPMMVPPATPMNRETTSLRKKNRLRTRTRIPPFDVDSSFFTTPISLQGTTKSNAISVEQYDGVSASASSPVHVINLSDTEDDDEVRILNFTPINTSFGKRSKKSSSKGECSNSASFVCEICTETKTARDSFSIIGCHHVYCNSCVAQYVESKLEENIVSIPCPVPGCRGLLEADDCREILAPRVFDRWGKALCEAVIAAEEKFYCPFADCSVMLIRGIEENNIREAECPNCRRLFCAQCRVPWHDNMPCEDFQKLNADERDKEDIMLMNLANQMQWKRCPRCRFYVAKSDGCMYMKCRGKTQKQLLLLIHYRKVASVY*

>Glyma09g08670.3   sequence type=predicted peptide   gene model=Glyma09g08670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLNPEPPPPPPPMMVPPATPMNRETTSLRKKNRLRTRTRIPPFDVDSSFFTTPISLQGTTKSNAISVEQYDGVSASASSPVHVINLSDTEDDDEVRILNFTPINTSFGKRSKKSSSKGECSNSASFVCEICTETKTARDSFSIIGCHHVYCNSCVAQYVESKLEENIVSIPCPVPGCRGLLEADDCREILAPRVFDRWGKALCEAVIAAEEKFYCPFADCSVMLIRGIEENNIREAECPNCRRLFCAQCRVPWHDNMPCEDFQKLNADERDKEDIMLMNLANQMQWKRCPRCRFYVAKSDGCMYMKCRGKTQKQLLLLIHYRKVASVY*

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