Glyma09g08630 - SoyBase

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Report for Sequence Feature Glyma09g08630

Feature Type:	gene_model
Chromosome:	Gm09
Start:	7956399
stop:	7957599
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g08630

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G06520	AT	Annotation by Michelle Graham. TAIR10: photosystem II subunit X \| chr2:2587868-2588218 REVERSE LENGTH=116	SoyBase	E_val: 2.00E-27	ISS
GO:0015979	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009523	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: photosystem II	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF06596	PFAM	Photosystem II reaction centre X protein (PsbX)	JGI		ISS
UniRef100_C1K5D2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chloroplast photosystem II subunit X n=1 Tax=Vigna radiata RepID=C1K5D2_VIGRA	SoyBase	E_val: 2.00E-42	ISS
UniRef100_C6SWQ2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SWQ2_SOYBN	SoyBase	E_val: 8.00E-79	ISS

Expression Patterns of Glyma09g08630

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g08630 not represented in the dataset	Glyma09g08630 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma09g08630 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g073900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g08630

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g08630

Limit To All Plant Sequences

>Glyma09g08630.1   sequence type=CDS   gene model=Glyma09g08630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCCACTTCTGCAGTTTCATTGGCTATGCCAGTAACTTATGCCAGCCAGAAGAGGGTACTGGTGCCTAGCTCTGATGCATTATTCCTCAAGCCACTGCCTCTACGTTCTTATTCTTCCAAGGCAATGGCAGCATCAAAAGTACCCAATGGAAGGTTTCAGGTGAGGGCTTCCATGAAGGAGAAAGTTGTGACAGGCCTCACAGCAGCTGCATTCACAGCCTCAATGATGGCTCCTGATGTGGCCGAGGCCGCCGTTTCGCCTTCTCTCAAGAACTTCTTGCTCAGCATCGCCGCCGGTGGTGTTGTTGTTGCTGCCATTATCGGTGCGGTGGTCGGGGTTTCCAATTTCGATCCCGTCAAGCGAAGCTGA

Predicted protein sequences of Glyma09g08630

Limit To All Plant Sequences

>Glyma09g08630.1   sequence type=predicted peptide   gene model=Glyma09g08630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASTSAVSLAMPVTYASQKRVLVPSSDALFLKPLPLRSYSSKAMAASKVPNGRFQVRASMKEKVVTGLTAAAFTASMMAPDVAEAAVSPSLKNFLLSIAAGGVVVAAIIGAVVGVSNFDPVKRS*

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